Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C209T8 Lonicera japonica HOM05D000147 ORTHO05D020553 2.1e-32 141.7 69 100.0
Lj9C209T11 Lonicera japonica HOM05D000147 ORTHO05D007841 9.5e-30 132.9 65 98.5
Lj9C572G13 Lonicera japonica HOM05D000147 ORTHO05D007841 1.2e-27 125.9 65 93.8
Lju1295C3G7 Lonicera japonica HOM05D000055 ORTHO05D007841 5.8e-27 123.6 63 95.2
Lj9C210G3 Lonicera japonica HOM05D000055 ORTHO05D007841 7.6e-27 123.2 64 93.8
THA.LOC104827616 Tarenaya hassleriana HOM05D000147 ORTHO05D007841 2.5e-22 108.2 64 81.2
Actinidia31433 Actinidia chinensis HOM05D000147 ORTHO05D007841 5.6e-22 107.1 65 81.5
Atru.chr5.331 Acer truncatum HOM05D000147 ORTHO05D007841 7.3e-22 106.7 65 78.5
Ciclev10019901m.g Citrus clementina HOM05D000147 ORTHO05D007841 1.2e-21 105.9 65 76.9
Hund27358 Selenicereus undatus HOM05D000147 ORTHO05D007841 1.2e-21 105.9 63 77.8
Prupe.2G148300 Prunus persica HOM05D000147 ORTHO05D007841 6.2e-21 103.6 65 72.3
Thhalv10001419m.g Eutrema salsugineum HOM05D000147 ORTHO05D007841 1.4e-20 102.4 64 76.6
Manes.05G043500 Manihot esculenta HOM05D000147 ORTHO05D007841 1.4e-20 102.4 65 73.8
Rhsim07G0024600 Rhododendron simsii HOM05D000147 ORTHO05D007841 1.4e-20 102.4 65 76.9
Hma1.2p1_0532F.1_g173420 Hydrangea macrophylla HOM05D000147 ORTHO05D007841 1.8e-20 102.1 59 81.4
Cpa.g.sc18.146 Carica papaya HOM05D000147 ORTHO05D007841 2.4e-20 101.7 64 78.1
MD02G1200800 Malus domestica HOM05D000147 ORTHO05D007841 2.4e-20 101.7 65 75.4
CiPaw.02G165900 Carya illinoinensis HOM05D000147 ORTHO05D007841 4.0e-20 100.9 63 77.8
Sp4g27530 Schrenkiella parvula HOM05D000147 ORTHO05D007841 4.0e-20 100.9 64 76.6
Dinv43728 Davidia involucrata HOM05D000147 ORTHO05D007841 5.2e-20 100.5 63 81.0
Peaxi162Scf00416g00418 Petunia axillaris HOM05D000147 ORTHO05D007841 5.2e-20 100.5 65 75.4
BraA05t19522Z Brassica rapa HOM05D000147 ORTHO05D007841 6.9e-20 100.1 57 80.7
Carub.0004s2811 Capsella rubella HOM05D000147 ORTHO05D007841 6.9e-20 100.1 64 76.6
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 6.9e-20 100.1 65 76.9
Eucgr.D02441 Eucalyptus grandis HOM05D000147 ORTHO05D007841 6.9e-20 100.1 63 77.8
Hma1.2p1_0532F.1_g173430 Hydrangea macrophylla HOM05D000147 ORTHO05D007841 6.9e-20 100.1 57 82.5
RcHm_v2.0_Chr1g0350931 Rosa chinensis HOM05D000147 ORTHO05D007841 6.9e-20 100.1 66 72.7
Sc02g0002430 Simmondsia chinensis HOM05D000147 ORTHO05D007841 8.9e-20 99.8 63 77.8
Sc02g0002480 Simmondsia chinensis HOM05D000108 ORTHO05D001724 8.9e-20 99.8 63 77.8
BcaB02g09001 Brassica carinata HOM05D000147 ORTHO05D007841 1.2e-19 99.4 57 78.9
CARHR140690 Cardamine hirsuta HOM05D000147 ORTHO05D007841 1.2e-19 99.4 64 76.6
CSS0036479 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D007841 1.5e-19 99.0 65 73.8
Lsat_1_v5_gn_3_133581 Lactuca sativa HOM05D000147 ORTHO05D007841 1.5e-19 99.0 55 83.6
PGR031G2670 Punica granatum HOM05D000147 ORTHO05D007841 1.5e-19 99.0 63 74.6
Cfa001693 Carpinus fangiana HOM05D000147 ORTHO05D007841 2.0e-19 98.6 63 79.4
Haze_16839 Corylus avellana HOM05D000147 ORTHO05D007841 2.0e-19 98.6 63 79.4
FvH4_7g12180 Fragaria vesca HOM05D000147 ORTHO05D007841 2.0e-19 98.6 65 73.8
FAN01G2344 Fragaria x ananassa HOM05D000147 ORTHO05D007841 2.0e-19 98.6 66 72.7
FAN03G0084 Fragaria x ananassa HOM05D000147 ORTHO05D007841 2.0e-19 98.6 66 72.7
FAN06G1976 Fragaria x ananassa HOM05D000147 ORTHO05D007841 2.0e-19 98.6 65 73.8
FAN06G3375 Fragaria x ananassa HOM05D000147 ORTHO05D007841 2.0e-19 98.6 65 73.8
FAN10G0099 Fragaria x ananassa HOM05D000147 ORTHO05D007841 2.0e-19 98.6 65 73.8
FAN10G2051 Fragaria x ananassa HOM05D000147 ORTHO05D007841 2.0e-19 98.6 65 73.8
Aa31LG1G27000 Aethionema arabicum HOM05D000147 ORTHO05D007841 2.6e-19 98.2 60 78.3
AL4G44670 Arabidopsis lyrata HOM05D000147 ORTHO05D007841 2.6e-19 98.2 64 73.4
Nitab4.5_0002436g0040 Nicotiana tabacum HOM05D000147 ORTHO05D007841 2.6e-19 98.2 65 73.8
Nitab4.5_0008545g0050 Nicotiana tabacum HOM05D000147 ORTHO05D007841 2.6e-19 98.2 65 73.8
BcaB06g29419 Brassica carinata HOM05D000147 ORTHO05D007841 3.4e-19 97.8 64 71.9
HanXRQChr13g0425571 Helianthus annuus HOM05D000147 ORTHO05D007841 3.4e-19 97.8 55 81.8
Solyc01g094150.3 Solanum lycopersicum HOM05D000147 ORTHO05D007841 3.4e-19 97.8 65 72.3
Sopen01g037950 Solanum pennellii HOM05D000147 ORTHO05D007841 3.4e-19 97.8 65 72.3
PGSC0003DMG401000018 Solanum tuberosum HOM05D000147 ORTHO05D020553 3.4e-19 97.8 65 72.3
A05p05520 Brassica napus HOM05D000147 ORTHO05D007841 4.4e-19 97.4 57 77.2
Cc02_g36470 Coffea canephora HOM05D000147 ORTHO05D007841 4.4e-19 97.4 62 79.0
vmacro13380 Vaccinium macrocarpon HOM05D000147 ORTHO05D007841 4.4e-19 97.4 65 73.8
C04p06460 Brassica napus HOM05D000147 ORTHO05D007841 5.8e-19 97.1 57 78.9
BolC4t22269H Brassica oleracea HOM05D000147 ORTHO05D007841 5.8e-19 97.1 57 78.9
Oeu036608.1 Olea europaea HOM05D000147 ORTHO05D007841 5.8e-19 97.1 65 72.3
Potri.014G071900 Populus trichocarpa HOM05D000147 ORTHO05D007841 5.8e-19 97.1 64 75.0
SGA_v2.0_scaffold153G37038 Striga asiatica HOM05D000147 ORTHO05D020553 5.8e-19 97.1 65 75.4
TAR629G3167 Trochodendron aralioides HOM05D000147 ORTHO05D007841 5.8e-19 97.1 63 74.6
GSVIVG01027537001 Vitis vinifera HOM05D000147 ORTHO05D007841 9.9e-19 96.3 63 76.2
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 1.7e-18 95.5 60 75.0
CANSAT56G2956 Cannabis sativa HOM05D000147 ORTHO05D007841 2.2e-18 95.1 66 71.2
CAN.G78.14 Capsicum annuum HOM05D000147 ORTHO05D007841 2.2e-18 95.1 65 70.8
ClCG05G002060 Citrullus lanatus HOM05D000147 ORTHO05D007841 2.2e-18 95.1 59 78.0
Ah.05g175240 Amaranthus hybridus HOM05D000147 ORTHO05D007841 4.9e-18 94.0 60 73.3
BcaC02g07086 Brassica carinata HOM05D000147 ORTHO05D007841 4.9e-18 94.0 60 73.3
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 4.9e-18 94.0 60 73.3
Migut.B01655 Erythranthe guttata HOM05D000147 ORTHO05D007841 4.9e-18 94.0 65 72.3
arahy.Tifrunner.gnm1.ann1.W5K1B8 Arachis hypogaea HOM05D000147 ORTHO05D007841 6.4e-18 93.6 55 80.0
arahy.Tifrunner.gnm1.ann1.WCLM28 Arachis hypogaea HOM05D000147 ORTHO05D007841 6.4e-18 93.6 55 80.0
MSTRG.17211 Avicennia marina HOM05D000147 ORTHO05D007841 6.4e-18 93.6 65 69.2
Thecc.07G132300 Theobroma cacao HOM05D000147 ORTHO05D007841 6.4e-18 93.6 64 70.3
Phvul.008G074900 Phaseolus vulgaris HOM05D000147 ORTHO05D007841 8.4e-18 93.2 64 70.3
Sabra14G0051100 Salix brachista HOM05D000147 ORTHO05D007841 8.4e-18 93.2 64 73.4
DCAR_006880 Daucus carota HOM05D000147 ORTHO05D007841 1.1e-17 92.8 65 70.8
Gohir.D07G151500 Gossypium hirsutum HOM05D000147 ORTHO05D007841 1.1e-17 92.8 64 71.9
Gorai.001G173400 Gossypium raimondii HOM05D000147 ORTHO05D007841 1.1e-17 92.8 64 71.9
QL08p051831 Quercus lobata HOM05D000147 ORTHO05D007841 1.1e-17 92.8 54 83.3
Lj1g0021065 Lotus japonicus HOM05D000147 ORTHO05D007841 1.4e-17 92.4 55 78.2
AUR62004238 Chenopodium quinoa HOM05D000147 ORTHO05D007841 2.4e-17 91.7 60 75.0
Ca_07834_v3 Cicer arietinum L. HOM05D000147 ORTHO05D007841 2.4e-17 91.7 55 78.2
MELO3C006171.2 Cucumis melo HOM05D000147 ORTHO05D007841 2.4e-17 91.7 59 72.9
CsaV3_3G009500 Cucumis sativus L. HOM05D000147 ORTHO05D007841 2.4e-17 91.7 59 72.9
Duzib133G1541 Durio zibethinus HOM05D000147 ORTHO05D007841 2.4e-17 91.7 64 70.3
Migut.O00759 Erythranthe guttata HOM05D000147 ORTHO05D007841 2.4e-17 91.7 65 70.8
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 3.2e-17 91.3 64 68.8
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 3.2e-17 91.3 64 68.8
Sed0028198 Sechium edule HOM05D000147 ORTHO05D007841 3.2e-17 91.3 59 74.6
TPR.G26950 Trifolium pratense HOM05D000147 ORTHO05D007841 3.2e-17 91.3 60 73.3
COL.COLO4_12580 Corchorus olitorius HOM05D000147 ORTHO05D007841 4.2e-17 90.9 65 64.6
EL10Ac1g00931 Beta vulgaris HOM05D000147 ORTHO05D007841 5.4e-17 90.5 60 71.7
Medtr7g075520 Medicago truncatula HOM05D000147 ORTHO05D007841 7.1e-17 90.1 55 74.5
VMungo1383G3024 Vigna mungo HOM05D000147 ORTHO05D007841 7.1e-17 90.1 64 67.2
AUR62013610 Chenopodium quinoa HOM05D000147 ORTHO05D007841 9.3e-17 89.7 60 73.3
Gohir.A07G145300 Gossypium hirsutum HOM05D000147 ORTHO05D007841 9.3e-17 89.7 63 71.4
Psat3g114560 Pisum sativum HOM05D000147 ORTHO05D007841 9.3e-17 89.7 55 76.4
Glyma.09G267500 Glycine max HOM05D000147 ORTHO05D007841 1.2e-16 89.4 55 74.5
Glyma.18G222400 Glycine max HOM05D000147 ORTHO05D007841 1.2e-16 89.4 55 74.5
MBI12_g33357_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D007841 1.2e-16 89.4 56 71.4
ECA240G0990 Erigeron canadensis HOM05D000147 ORTHO05D007841 2.1e-16 88.6 63 69.8
unitig_26.g9725 Utricularia gibba HOM05D000968 ORTHO05D007841 2.1e-16 88.6 60 73.3
Aqoxy7G00545 Aquilegia oxysepala HOM05D000147 ORTHO05D007841 2.7e-16 88.2 53 75.5
Lalb_Chr01g0021291 Lupinus albus HOM05D000147 ORTHO05D007841 1.7e-15 85.5 55 69.1
PSO782G4322 Papaver somniferum HOM05D000147 ORTHO05D007841 2.3e-15 85.1 63 66.7
Nn1g01162 Nelumbo nucifera HOM05D000147 ORTHO05D007841 1.1e-14 82.8 52 78.8
Actinidia12275 Actinidia chinensis HOM05D000147 ORTHO05D007841 1.3e-13 79.3 58 67.2
PSO478G4229 Papaver somniferum HOM05D000147 ORTHO05D007841 4.8e-13 77.4 63 63.5
Os06g0130000 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D007841 8.1e-13 76.6 62 61.3
ATR0757G121 Amborella trichopoda HOM05D000147 ORTHO05D007841 1.4e-12 75.9 50 68.0
HPP92_020937 Vanilla planifolia HOM05D000147 ORTHO05D007841 1.4e-12 75.9 50 68.0
HPP92_020955 Vanilla planifolia HOM05D000147 ORTHO05D007841 1.4e-12 75.9 50 68.0
Zm00001eb378370 Zea mays HOM05D000147 ORTHO05D007841 3.1e-12 74.7 62 59.7
Zm00001eb269570 Zea mays HOM05D000147 ORTHO05D020553 5.3e-12 73.9 62 58.1
Pp3c11_13620 Physcomitrium patens HOM05D000147 ORTHO05D007841 1.5e-11 72.4 54 61.1
CDE04G0102 Ceratophyllum demersum HOM05D000147 ORTHO05D007841 1.7e-10 68.9 52 61.5
Dinv43836 Davidia involucrata HOM05D000147 ORTHO05D020553 1.1e-09 66.2 43 74.4
MBI12_g37711_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D007841 1.1e-09 66.2 58 63.8
Mapoly0103s0050 Marchantia polymorpha HOM05D000147 ORTHO05D007841 1.4e-09 65.9 57 52.6
RcHm_v2.0_Chr1g0351021 Rosa chinensis HOM05D000147 ORTHO05D020553 2.3e-07 58.5 40 75.0
SMO169G0088 Selaginella moellendorffii HOM05D000147 ORTHO05D007841 5.1e-07 57.4 64 43.8


User provided reference genes

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