Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A609T73 Lonicera japonica HOM05D003902 ORTHO05D005866 3.9e-22 107.1 48 100.0
CANSAT80G0986 Cannabis sativa HOM05D003902 ORTHO05D005866 1.1e-19 99.0 44 97.7
Lalb_Chr10g0100971 Lupinus albus HOM05D003902 ORTHO05D005866 2.4e-19 97.8 44 95.5
ATR0315G125 Amborella trichopoda HOM05D003902 ORTHO05D005866 4.0e-19 97.1 48 87.5
Eucgr.A02139 Eucalyptus grandis HOM05D003902 ORTHO05D005866 4.0e-19 97.1 44 95.5
Psat4g164400 Pisum sativum HOM05D003902 ORTHO05D005866 4.0e-19 97.1 44 95.5
Thecc.01G330300 Theobroma cacao HOM05D003902 ORTHO05D005866 4.0e-19 97.1 44 95.5
MSTRG.9234 Avicennia marina HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
CSS0017733 Camellia sinensis var. sinensis HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
CAN.G546.26 Capsicum annuum HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
CDE04G0523 Ceratophyllum demersum HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
COL.COLO4_23075 Corchorus olitorius HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Dinv32654 Davidia involucrata HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
ECA236G3056 Erigeron canadensis HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Glyma.07G047700 Glycine max HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Glyma.16G016200 Glycine max HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Lj3g0025959 Lotus japonicus HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
MD01G1095300 Malus domestica HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
MD07G1164400 Malus domestica HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Medtr8g023820 Medicago truncatula HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Nn068s42296 Nelumbo nucifera HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Nn5g28264 Nelumbo nucifera HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Potri.002G182600 Populus trichocarpa HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Prupe.2G203400 Prunus persica HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Solyc11g066280.3 Solanum lycopersicum HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
Sopen11g026020 Solanum pennellii HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
PGSC0003DMG400000409 Solanum tuberosum HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
SGA_v2.0_scaffold16G07544 Striga asiatica HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
SGA_v2.0_scaffold82G26257 Striga asiatica HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
THA.LOC104825915 Tarenaya hassleriana HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
TWI09G0903 Tripterygium wilfordii HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
GSVIVG01022422001 Vitis vinifera HOM05D003902 ORTHO05D005866 5.3e-19 96.7 44 95.5
unitig_747.g21998 Utricularia gibba HOM05D003902 ORTHO05D005866 6.9e-19 96.3 44 93.2
Duzib138G1363 Durio zibethinus HOM05D003902 ORTHO05D005866 9.0e-19 95.9 44 93.2
Oeu014509.1 Olea europaea HOM05D003902 ORTHO05D005866 9.0e-19 95.9 44 93.2
Aa31LG5G1280 Aethionema arabicum HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
Ciclev10020807m.g Citrus clementina HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
DCAR_024001 Daucus carota HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
Gohir.D07G137700 Gossypium hirsutum HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
Gorai.001G149800 Gossypium raimondii HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
PSO339G4022 Papaver somniferum HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
PSO384G4956 Papaver somniferum HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
QL02p054986 Quercus lobata HOM05D003902 ORTHO05D005866 1.2e-18 95.5 43 93.0
TPR.G32793 Trifolium pratense HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
GSVIVG01023391001 Vitis vinifera HOM05D003902 ORTHO05D005866 1.2e-18 95.5 44 93.2
Atru.chr5.804 Acer truncatum HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
arahy.Tifrunner.gnm1.ann1.EQY875 Arachis hypogaea HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
arahy.Tifrunner.gnm1.ann1.GE61F7 Arachis hypogaea HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
Cc00_g05410 Coffea canephora HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
Cc09_g09110 Coffea canephora HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
Peaxi162Scf00086g01414 Petunia axillaris HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
SalBow1G7347 Salvia bowleyana HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
SalBow1G8176 Salvia bowleyana HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
TAR374G1339 Trochodendron aralioides HOM05D003902 ORTHO05D005866 1.5e-18 95.1 44 93.2
Aqoxy2G04194 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 2.0e-18 94.7 44 95.5
Aqoxy4G02970 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 2.0e-18 94.7 44 95.5
Migut.C00356 Erythranthe guttata HOM05D003902 ORTHO05D005866 2.0e-18 94.7 44 93.2
Actinidia28870 Actinidia chinensis HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 93.2
AL6G51780 Arabidopsis lyrata HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
AT4G01560 Arabidopsis thaliana HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
Carub.0006s3564 Capsella rubella HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
CARHR250110 Cardamine hirsuta HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
ClCG10G008700 Citrullus lanatus HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
ClCG10G016910 Citrullus lanatus HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
MELO3C009689.2 Cucumis melo HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
CsaV3_3G039450 Cucumis sativus L. HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
Thhalv10028775m.g Eutrema salsugineum HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
Gohir.A07G133200 Gossypium hirsutum HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
PGR042G3296 Punica granatum HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 93.2
Sp6g01470 Schrenkiella parvula HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
Sed0016671 Sechium edule HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
SEGI_13893 Sequoiadendron giganteum HOM05D003902 ORTHO05D005866 2.6e-18 94.4 44 90.9
CiPaw.02G046000 Carya illinoinensis HOM05D003902 ORTHO05D005866 3.4e-18 94.0 44 93.2
Phvul.003G017600 Phaseolus vulgaris HOM05D003902 ORTHO05D005866 3.4e-18 94.0 44 93.2
FAN06G2806 Fragaria x ananassa HOM05D003902 ORTHO05D005866 4.5e-18 93.6 48 83.3
Potri.014G108400 Populus trichocarpa HOM05D003902 ORTHO05D005866 4.5e-18 93.6 44 93.2
FvH4_7g18130 Fragaria vesca HOM05D003902 ORTHO05D005866 7.6e-18 92.8 48 81.2
FAN01G1310 Fragaria x ananassa HOM05D003902 ORTHO05D005866 7.6e-18 92.8 48 81.2
FAN03G0853 Fragaria x ananassa HOM05D003902 ORTHO05D005866 7.6e-18 92.8 48 81.2
FAN03G2357 Fragaria x ananassa HOM05D003902 ORTHO05D005866 7.6e-18 92.8 48 81.2
FAN06G3546 Fragaria x ananassa HOM05D003902 ORTHO05D005866 7.6e-18 92.8 48 81.2
FAN10G0112 Fragaria x ananassa HOM05D003902 ORTHO05D005866 7.6e-18 92.8 48 81.2
FAN10G1292 Fragaria x ananassa HOM05D003902 ORTHO05D005866 7.6e-18 92.8 48 81.2
SMO244G0063 Selaginella moellendorffii HOM05D003902 ORTHO05D005866 9.9e-18 92.4 44 90.9
BcaB01g02370 Brassica carinata HOM05D003902 ORTHO05D005866 1.3e-17 92.0 44 88.6
BcaC04g24086 Brassica carinata HOM05D003902 ORTHO05D005866 1.3e-17 92.0 44 88.6
BolC9t53054H Brassica oleracea HOM05D003902 ORTHO05D005866 1.3e-17 92.0 44 88.6
BraA09t35783Z Brassica rapa HOM05D003902 ORTHO05D005866 1.3e-17 92.0 44 88.6
Manes.07G093900 Manihot esculenta HOM05D003902 ORTHO05D005866 1.3e-17 92.0 44 90.9
BcaB01g02136 Brassica carinata HOM05D003902 ORTHO05D005866 1.7e-17 91.7 44 88.6
FvH4_7g18100 Fragaria vesca HOM05D003902 ORTHO05D005866 1.7e-17 91.7 44 88.6
RcHm_v2.0_Chr1g0361751 Rosa chinensis HOM05D003902 ORTHO05D005866 1.7e-17 91.7 44 88.6
MBI12_g05893_MAGBIO Magnolia biondii HOM05D003902 ORTHO05D005866 2.9e-17 90.9 44 88.6
VMungo0331G0507 Vigna mungo HOM05D003902 ORTHO05D005866 2.9e-17 90.9 44 90.9
Zm00001eb356330 Zea mays HOM05D003902 ORTHO05D005866 2.9e-17 90.9 44 86.4
AUR62004576 Chenopodium quinoa HOM05D003902 ORTHO05D005866 4.9e-17 90.1 44 86.4
AUR62023522 Chenopodium quinoa HOM05D003902 ORTHO05D005866 4.9e-17 90.1 44 86.4
Mapoly0132s0039 Marchantia polymorpha HOM05D003902 ORTHO05D005866 4.9e-17 90.1 44 86.4
HanXRQChr07g0187351 Helianthus annuus HOM05D003902 ORTHO05D005866 6.4e-17 89.7 44 88.6
vmacro11191 Vaccinium macrocarpon HOM05D003902 ORTHO05D005866 6.4e-17 89.7 44 88.6
Rhsim01G0181600 Rhododendron simsii HOM05D003902 ORTHO05D005866 8.4e-17 89.4 43 90.7
Ah.05g178790 Amaranthus hybridus HOM05D003902 ORTHO05D005866 1.1e-16 89.0 44 84.1
EL10Ac1g00160 Beta vulgaris HOM05D003902 ORTHO05D005866 1.9e-16 88.2 44 84.1
HPP92_016601 Vanilla planifolia HOM05D003902 ORTHO05D005866 1.9e-16 88.2 44 86.4
Pp3c1_10040 Physcomitrium patens HOM05D003902 ORTHO05D005866 4.2e-16 87.0 44 86.4
PRCOL_00005239 Prasinoderma coloniale HOM05D003902 ORTHO05D005866 9.6e-13 75.9 44 79.5
Lsat_1_v5_gn_7_76501 Lactuca sativa HOM05D003902 ORTHO05D005866 6.2e-12 73.2 31 96.8
Cfa003716 Carpinus fangiana HOM05D003902 ORTHO05D005866 3.1e-11 70.9 31 93.5
Haze_15766 Corylus avellana HOM05D003902 ORTHO05D005866 3.1e-11 70.9 31 93.5
Dinv40719 Davidia involucrata HOM05D003902 ORTHO05D005866 3.1e-11 70.9 31 93.5
Sabra02G0132600 Salix brachista HOM05D003902 ORTHO05D005866 3.1e-11 70.9 31 93.5
Cre04.g218850 Chlamydomonas reinhardtii HOM05D003902 ORTHO05D005866 4.0e-11 70.5 44 72.7
CBR_g19066 Chara braunii HOM05D003902 ORTHO05D005866 6.9e-11 69.7 44 63.6
TAR375G0943 Trochodendron aralioides HOM05D003902 ORTHO05D005866 6.9e-11 69.7 31 90.3
Ca_23480_v3 Cicer arietinum L. HOM05D003902 ORTHO05D005866 9.0e-11 69.3 31 90.3
Nitab4.5_0001819g0080 Nicotiana tabacum HOM05D003902 ORTHO05D005866 9.0e-11 69.3 31 90.3
C09p01200 Brassica napus HOM05D003902 ORTHO05D005866 1.5e-10 68.6 31 87.1
RcHm_v2.0_Chr5g0052991 Rosa chinensis HOM05D003902 ORTHO05D005866 2.0e-10 68.2 31 87.1
Sabra14G0079900 Salix brachista HOM05D003902 ORTHO05D005866 2.6e-10 67.8 31 90.3
Nitab4.5_0000329g0230 Nicotiana tabacum HOM05D003902 ORTHO05D005866 3.4e-10 67.4 30 90.0
Os06g0137500 Oryza sativa ssp. japonica HOM05D003902 ORTHO05D005866 3.4e-10 67.4 31 87.1
A09p01120 Brassica napus HOM05D003902 ORTHO05D005866 7.6e-10 66.2 31 83.9
RcHm_v2.0_Chr1g0321231 Rosa chinensis HOM05D003902 ORTHO05D005866 1.0e-09 65.9 31 83.9
RcHm_v2.0_Chr5g0043791 Rosa chinensis HOM05D003902 ORTHO05D005866 1.0e-09 65.9 31 83.9
RcHm_v2.0_Chr5g0055421 Rosa chinensis HOM05D003902 ORTHO05D005866 1.0e-09 65.9 31 83.9
RcHm_v2.0_Chr7g0219071 Rosa chinensis HOM05D003902 ORTHO05D005866 1.3e-09 65.5 35 74.3
Peaxi162Scf00004g04214 Petunia axillaris HOM05D003902 ORTHO05D005866 2.2e-09 64.7 43 72.1
RcHm_v2.0_Chr2g0110161 Rosa chinensis HOM05D003902 ORTHO05D005866 2.2e-09 64.7 31 80.6
RcHm_v2.0_Chr1g0346391 Rosa chinensis HOM05D003902 ORTHO05D005866 2.9e-09 64.3 31 80.6
RcHm_v2.0_Chr3g0493911 Rosa chinensis HOM05D003902 ORTHO05D005866 3.8e-09 63.9 30 83.3
RcHm_v2.0_Chr7g0204491 Rosa chinensis HOM05D003902 ORTHO05D005866 3.8e-09 63.9 31 80.6
RcHm_v2.0_Chr3g0479951 Rosa chinensis HOM05D003902 ORTHO05D005866 8.4e-09 62.8 30 80.0
RcHm_v2.0_Chr4g0406331 Rosa chinensis HOM05D003902 ORTHO05D005866 9.3e-08 59.3 31 77.4
Cc01_g05930 Coffea canephora HOM05D003902 ORTHO05D005866 1.6e-07 58.5 28 85.7
RcHm_v2.0_Chr7g0228521 Rosa chinensis HOM05D003902 ORTHO05D005866 2.3e-06 54.7 27 81.5
MCO01G200 Micromonas commoda HOM05D003902 ORTHO05D005866 5.1e-06 53.5 47 59.6


User provided reference genes

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