Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.9e-98 362.5 180 100.0
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.8e-46 188.7 172 54.1
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 2.8e-41 172.6 180 52.8
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 4.8e-41 171.8 172 55.8
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.7e-39 166.0 167 55.7
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 8.5e-38 161.0 156 54.5
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.5e-37 160.2 161 51.6
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.2e-36 157.1 174 50.6
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 3.0e-35 152.5 214 41.6
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 6.8e-35 151.4 164 51.2
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 8.8e-35 151.0 170 50.6
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.2e-34 150.6 173 45.7
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.0e-34 149.8 187 47.6
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 7.5e-34 147.9 208 44.2
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 7.5e-34 147.9 182 44.0
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 3.7e-33 145.6 173 46.8
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.8e-33 145.2 188 46.3
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 6.3e-33 144.8 218 39.9
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.4e-32 143.7 188 45.7
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.4e-32 143.7 160 48.8
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.8e-32 143.3 167 49.7
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.4e-32 142.9 184 41.8
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 5.4e-32 141.7 192 46.4
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.6e-31 140.2 217 41.5
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.6e-31 140.2 157 51.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.6e-31 140.2 184 46.2
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.6e-31 140.2 183 45.9
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.0e-31 139.8 175 48.0
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.0e-31 139.8 180 46.7
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.7e-31 139.4 192 43.2
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.7e-31 137.9 193 44.6
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 2.9e-30 136.0 161 49.1
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 2.9e-30 136.0 158 49.4
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 6.5e-30 134.8 172 44.8
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 6.5e-30 134.8 207 41.5
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.5e-29 133.7 172 41.9
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.9e-29 133.3 165 45.5
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.9e-29 133.3 165 45.5
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 2.5e-29 132.9 207 41.5
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 2.5e-29 132.9 182 44.0
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 4.2e-29 132.1 167 46.1
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.2e-29 132.1 180 43.9
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 7.2e-29 131.3 167 45.5
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 7.2e-29 131.3 195 42.6
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 9.5e-29 131.0 165 46.1
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.5e-29 131.0 159 44.7
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 9.5e-29 131.0 181 42.5
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 9.5e-29 131.0 202 40.6
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.2e-28 130.6 173 44.5
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 3.6e-28 129.0 192 42.7
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 3.6e-28 129.0 161 45.3
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 3.6e-28 129.0 180 44.4
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 4.7e-28 128.6 160 46.9
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 8.0e-28 127.9 170 43.5
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 8.0e-28 127.9 178 42.7
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.0e-27 127.5 159 43.4
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.0e-27 127.5 177 45.2
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.4e-27 127.1 168 47.0
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.4e-27 127.1 187 41.2
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.4e-27 127.1 198 42.4
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.0e-27 125.9 177 44.6
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.2e-27 125.2 160 42.5
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 6.8e-27 124.8 163 42.3
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-26 124.0 174 44.3
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 5.7e-26 121.7 192 42.2
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.3e-25 120.6 203 40.4
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.7e-25 120.2 193 40.4
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.7e-25 120.2 165 42.4
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.7e-25 120.2 166 43.4
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 2.2e-25 119.8 191 43.5
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 4.9e-25 118.6 156 45.5
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 6.3e-25 118.2 164 40.2
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.4e-24 117.1 169 42.0
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 2.4e-24 116.3 174 39.7
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.4e-24 116.3 185 40.0
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.4e-24 116.3 195 39.5
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.1e-24 115.9 185 39.5
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.1e-24 115.9 157 42.7
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 5.4e-24 115.2 171 39.2
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 5.4e-24 115.2 171 39.2
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 7.0e-24 114.8 159 43.4
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.2e-24 114.4 185 39.5
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.6e-23 113.6 183 39.9
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.6e-23 113.6 159 42.1
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 2.7e-23 112.8 176 39.2
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 2.7e-23 112.8 191 35.1
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 4.5e-23 112.1 169 40.2
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 7.8e-23 111.3 169 37.9
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.3e-22 110.5 164 40.2
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-22 110.2 169 39.6
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 2.9e-22 109.4 166 41.0
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 5.0e-22 108.6 172 40.7
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 5.0e-22 108.6 175 38.3
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 8.6e-22 107.8 138 46.4
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.9e-21 106.7 191 37.2
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 2.5e-21 106.3 186 34.9
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 4.3e-21 105.5 172 37.2
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.2e-20 104.0 182 37.4
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.2e-20 104.0 171 37.4
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.6e-20 103.6 194 37.6
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.6e-20 103.6 183 37.7
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 3.6e-20 102.4 164 37.8
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.6e-20 102.4 180 36.7
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 4.7e-20 102.1 150 38.0
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 6.1e-20 101.7 170 36.5
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 8.0e-20 101.3 182 35.2
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 1.4e-19 100.5 144 38.9
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.8e-19 100.1 198 35.4
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.0e-19 99.0 198 36.4
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 5.2e-19 98.6 216 36.6
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.5e-18 97.1 164 36.0
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.0e-18 96.7 215 34.9
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 2.6e-18 96.3 114 50.9
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 4.4e-18 95.5 191 35.1
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.6e-15 87.0 201 31.8
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.6e-15 87.0 177 37.9
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.7e-15 86.3 193 31.6
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 7.8e-15 84.7 152 32.9
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.0e-14 84.3 152 32.9
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.0e-14 82.8 149 37.6
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.9e-14 82.4 106 43.4
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 6.6e-14 81.6 199 28.1
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-13 80.5 91 44.0
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-12 77.0 98 43.9
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-12 77.0 98 43.9
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.7e-12 75.5 141 35.5
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 6.8e-11 71.6 165 30.9
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 1.3e-09 67.4 121 41.3
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.2e-09 66.6 64 48.4
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 3.2e-08 62.8 66 42.4
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.4e-08 62.0 108 37.0
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 7.0e-08 61.6 116 32.8
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 7.0e-08 61.6 112 40.2
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 9.2e-08 61.2 164 26.8
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-07 60.8 191 30.4
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-07 60.8 191 30.4
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.0e-06 57.8 93 44.1
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 6.6e-06 55.1 113 32.7
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 8.6e-06 54.7 136 27.9


User provided reference genes

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