Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 0.0e+00 1387.9 684 100.0
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 2.0e-249 865.9 683 63.3
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 3.6e-246 855.1 684 62.6
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 1.7e-240 836.3 681 62.0
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 5.2e-237 824.7 681 61.4
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 8.3e-235 817.4 684 62.0
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 5.4e-234 814.7 682 61.4
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 6.6e-232 807.7 608 66.3
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.1e-230 802.7 682 59.5
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 2.3e-229 799.3 682 59.4
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 3.2e-226 788.9 688 58.6
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 6.0e-225 784.6 684 60.1
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 3.0e-224 782.3 667 60.9
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 3.6e-222 775.4 683 58.9
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.1e-221 772.3 682 57.9
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 8.9e-221 770.8 683 56.8
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 5.1e-216 755.0 684 56.9
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 4.3e-215 751.9 704 57.1
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 7.3e-215 751.1 690 57.0
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 1.3e-214 750.4 698 54.7
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.6e-214 750.0 692 56.9
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.4e-213 746.1 683 55.2
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 5.3e-213 745.0 682 55.0
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 5.8e-212 741.5 690 56.8
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 7.6e-212 741.1 684 55.0
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.3e-211 740.3 685 57.5
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 9.3e-210 734.2 689 55.9
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.6e-209 733.4 684 55.8
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 5.1e-208 728.4 705 54.3
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 6.6e-208 728.0 686 54.4
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.6e-206 723.4 685 56.6
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 2.4e-205 719.5 683 54.8
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 1.5e-204 716.8 681 54.6
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 3.4e-204 715.7 682 54.7
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 9.9e-204 714.1 682 55.3
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.2e-203 713.0 685 54.0
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.9e-203 712.6 685 53.7
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 4.9e-203 711.8 691 54.6
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 6.4e-203 711.4 655 56.6
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.1e-202 710.7 685 53.9
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.4e-202 710.3 681 54.0
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 5.5e-202 708.4 681 54.3
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 9.3e-202 707.6 681 53.9
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 9.3e-202 707.6 684 55.8
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 7.9e-201 704.5 683 53.9
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.9e-201 704.5 683 53.6
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 5.1e-200 701.8 681 54.0
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.5e-199 700.3 683 54.0
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.3e-199 699.1 684 53.7
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 3.7e-198 695.7 679 54.3
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 4.0e-197 692.2 699 52.8
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.2e-195 686.4 696 53.6
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 6.5e-195 684.9 695 53.4
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 8.4e-195 684.5 692 52.7
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.1e-194 684.1 686 53.6
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 1.9e-194 683.3 694 52.7
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 4.2e-194 682.2 693 52.1
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 1.2e-193 680.6 681 53.5
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-193 680.2 692 52.9
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 2.1e-193 679.9 693 53.7
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.7e-193 679.5 691 53.3
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 6.0e-193 678.3 693 52.7
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 6.0e-193 678.3 691 52.8
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 6.0e-193 678.3 693 52.7
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.0e-192 677.6 691 53.4
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 3.0e-192 676.0 690 52.2
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 3.0e-192 676.0 693 51.2
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 6.7e-192 674.9 682 52.1
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 3.3e-191 672.5 692 52.3
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 7.4e-191 671.4 701 52.1
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.3e-190 670.6 684 52.0
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.3e-190 670.6 683 51.8
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.1e-189 667.5 735 49.3
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.8e-189 666.8 690 52.9
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 3.1e-189 666.0 694 51.9
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 5.8e-188 661.8 697 52.2
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.3e-187 660.6 693 52.5
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 3.8e-187 659.1 684 52.8
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.9e-186 656.8 682 51.3
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 3.2e-186 656.0 641 54.4
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 3.2e-186 656.0 712 48.3
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.5e-183 647.1 713 47.8
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.6e-182 643.7 683 51.7
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 4.8e-182 642.1 689 49.6
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 4.8e-182 642.1 689 49.6
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 6.9e-181 638.3 684 51.5
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.0e-180 636.7 686 50.1
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.9e-178 630.2 680 50.6
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 2.5e-178 629.8 686 48.7
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 3.3e-175 619.4 734 47.0
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 9.7e-175 617.8 687 47.7
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.5e-172 609.0 685 48.6
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 4.7e-169 599.0 668 47.2
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.9e-164 582.0 684 45.8
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.6e-161 573.9 482 58.9
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.6e-159 566.6 690 45.8
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 1.5e-154 550.8 630 48.4
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 9.1e-149 531.6 683 43.5
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.7e-147 527.3 672 44.8
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 2.0e-143 513.8 685 41.3
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 7.7e-140 501.9 685 41.5
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 1.3e-139 501.1 408 64.5
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 5.4e-133 479.2 685 40.4
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 3.5e-132 476.5 541 47.1
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 1.2e-124 451.4 692 42.3
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 1.2e-116 424.9 690 39.4
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 1.0e-115 421.8 689 39.0
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 3.9e-115 419.9 689 39.2
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.7e-110 404.4 686 37.9
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.0e-99 368.6 534 43.1
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 8.1e-97 359.0 323 57.9
FAN13G1302 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.7e-94 351.3 456 44.1
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.9e-94 350.5 288 59.7
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 1.6e-92 344.7 345 53.9
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.3e-91 341.7 677 35.2
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 2.5e-90 337.4 413 47.0
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 7.4e-90 335.9 683 34.3
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 6.2e-89 332.8 691 34.9
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.1e-88 332.0 405 47.4
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.8e-88 331.3 281 55.9
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 5.8e-87 326.2 299 55.2
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 6.4e-86 322.8 824 28.2
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 2.4e-85 320.9 695 33.8
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 3.2e-85 320.5 802 30.0
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 3.0e-83 313.9 281 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 6.7e-83 312.8 745 31.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-82 310.8 212 71.7
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 7.9e-76 289.3 440 40.9
CARHR254480 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.4e-72 277.7 334 45.2
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 5.9e-71 273.1 593 36.1
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 1.6e-65 255.0 561 33.9
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.8e-64 251.5 408 39.0
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 1.6e-60 238.4 203 57.1
SEGI_24894 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 6.1e-60 236.5 528 33.0
SEGI_00066 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.4e-59 235.3 533 33.2
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 1.1e-58 232.3 203 57.1
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.2e-57 228.0 172 66.9
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.1e-56 225.7 171 66.1
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 2.2e-54 218.0 291 44.0
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 2.1e-52 211.5 374 35.3
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 6.1e-52 209.9 157 66.9
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.9e-51 207.2 199 53.3
GSVIVG01032173001 Vitis vinifera HOM05D002759 ORTHO05D003290 9.7e-50 202.6 163 65.6
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-46 192.2 284 40.1
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.5e-45 188.7 180 56.1
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 3.2e-45 187.6 198 50.5
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 6.1e-44 183.3 287 36.6
GSVIVG01011206001 Vitis vinifera HOM05D002759 ORTHO05D003290 6.1e-44 183.3 148 58.8
SHI26609 Sapria himalayana HOM05D002759 ORTHO05D003290 5.7e-34 150.2 167 46.1
GSVIVG01005672001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.8e-33 147.9 109 68.8
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.9e-30 137.9 233 41.2
vmacro18627 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 8.8e-27 126.3 246 35.4
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.3e-25 122.5 150 43.3
SEGI_22976 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 5.9e-23 113.6 339 29.8
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 7.8e-23 113.2 160 42.5
COL.COLO4_16679 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.7e-22 112.1 124 50.0
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.8e-19 102.1 202 33.7
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 4.4e-18 97.4 164 37.2
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 4.4e-18 97.4 164 37.2
GSVIVG01038033001 Vitis vinifera HOM05D002759 ORTHO05D003290 4.9e-17 94.0 85 55.3
Hund17373 Selenicereus undatus HOM05D002759 ORTHO05D003290 3.5e-15 87.8 92 45.7
COL.COLO4_38329 Corchorus olitorius HOM05D002759 ORTHO05D003290 3.3e-13 81.3 60 65.0
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 4.7e-12 77.4 115 43.5
CSS0010724 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 8.0e-12 76.6 52 69.2
CSS0008587 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 8.9e-11 73.2 52 65.4
RcHm_v2.0_Chr4g0428261 Rosa chinensis HOM05D002759 ORTHO05D003290 8.9e-11 73.2 103 36.9
CSS0002368 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 1.2e-10 72.8 52 67.3
MD08G1226600 Malus domestica HOM05D002759 ORTHO05D003290 7.5e-10 70.1 75 52.0
C03p84490 Brassica napus HOM05D002759 ORTHO05D032766 4.9e-09 67.4 52 63.5
RcHm_v2.0_Chr4g0428251 Rosa chinensis HOM05D002759 ORTHO05D003290 3.2e-08 64.7 132 31.8
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 1.6e-07 62.4 66 53.0
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 1.0e-06 59.7 51 54.9


User provided reference genes

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