Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 4.7e-183 644.4 334 100.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 7.4e-112 407.9 350 64.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.0e-105 387.5 342 62.0
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.0e-104 383.3 350 60.6
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.3e-103 380.6 334 60.8
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.7e-103 380.2 336 62.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 4.8e-103 378.6 348 59.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.4e-102 376.3 337 60.8
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 7.0e-102 374.8 349 59.6
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.2e-101 374.0 364 59.6
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.2e-101 374.0 364 59.6
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 2.0e-101 373.2 351 59.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 2.0e-101 373.2 351 59.3
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.0e-100 370.9 352 58.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.0e-100 370.9 349 59.3
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.1e-99 367.5 348 58.3
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.5e-99 367.1 343 59.5
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.9e-99 366.7 349 59.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.2e-99 365.9 379 54.9
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.2e-99 365.5 341 61.3
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.6e-98 363.6 346 59.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.7e-98 362.8 339 60.5
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 3.6e-98 362.5 335 58.8
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.6e-98 362.5 367 56.7
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.1e-98 361.7 339 59.3
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.0e-97 360.9 335 59.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.8e-97 358.2 335 58.2
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.2e-96 357.5 345 58.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 9.8e-96 354.4 342 57.6
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 9.8e-96 354.4 391 53.5
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.3e-95 354.0 338 58.3
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.8e-95 352.1 339 56.6
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.8e-94 350.1 348 58.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 5.4e-94 348.6 348 57.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.2e-93 347.4 344 55.5
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.2e-93 347.4 340 57.4
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.0e-93 346.7 336 54.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 3.5e-93 345.9 334 56.6
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 4.5e-93 345.5 339 56.9
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 5.9e-93 345.1 334 56.0
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 5.9e-93 345.1 341 56.6
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 7.7e-93 344.7 337 56.7
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 7.7e-93 344.7 339 56.3
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.0e-92 344.4 352 55.7
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.3e-92 344.0 355 55.2
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.3e-92 344.0 346 55.5
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.7e-92 343.6 341 55.1
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.7e-92 343.6 341 55.1
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.9e-92 342.8 343 57.1
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.9e-92 342.8 350 55.7
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.8e-92 342.4 355 56.3
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 5.0e-92 342.0 335 56.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 6.5e-92 341.7 344 56.1
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 8.5e-92 341.3 342 54.1
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 8.5e-92 341.3 345 56.2
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.1e-91 340.9 339 57.5
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.1e-91 340.9 353 55.0
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.9e-91 340.1 341 55.4
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.9e-91 340.1 337 55.8
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 3.2e-91 339.3 335 56.4
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 4.2e-91 339.0 340 57.4
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 7.2e-91 338.2 351 55.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 7.2e-91 338.2 334 56.0
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 7.2e-91 338.2 334 56.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 9.4e-91 337.8 341 55.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.6e-90 337.0 343 54.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 4.7e-90 335.5 344 55.2
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.3e-89 333.2 351 53.8
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 5.2e-89 332.0 353 52.4
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.2e-89 332.0 356 53.4
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 6.8e-89 331.6 340 54.7
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 9.8e-88 327.8 333 55.9
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 9.8e-88 327.8 333 55.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.7e-87 327.0 347 55.0
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.8e-87 326.2 341 54.0
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 4.9e-87 325.5 341 52.8
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.3e-87 325.1 371 52.3
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 6.3e-87 325.1 369 50.7
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 6.3e-87 325.1 368 51.4
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 4.1e-86 322.4 369 50.4
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 7.7e-85 318.2 342 54.1
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.3e-84 317.4 339 53.7
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 5.0e-84 315.5 376 51.3
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.9e-83 313.5 333 53.2
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.3e-83 312.8 338 52.4
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 5.6e-83 312.0 340 52.4
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.0e-81 307.8 340 53.5
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.8e-81 307.0 324 53.1
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.3e-81 306.6 339 51.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-78 297.4 340 51.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.4e-78 295.4 340 50.9
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 9.2e-78 294.7 340 50.6
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.2e-77 294.3 340 50.9
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 7.8e-77 291.6 340 50.0
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.6e-74 283.9 335 49.6
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.6e-74 282.7 390 42.3
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 4.0e-73 279.3 337 49.6
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.9e-71 273.1 350 47.7
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.9e-70 270.4 334 50.9
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.2e-70 268.1 331 49.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.7e-68 263.8 334 47.9
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.0e-68 263.1 335 49.9
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 3.0e-68 263.1 335 50.1
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 9.5e-67 258.1 334 45.5
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 6.8e-65 251.9 334 45.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 3.4e-64 249.6 334 46.1
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.8e-64 248.8 334 45.5
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.3e-60 237.7 353 42.8
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.5e-59 234.2 334 44.6
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.5e-59 233.4 336 44.0
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 4.3e-59 232.6 301 48.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.8e-55 219.5 336 42.0
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 7.1e-54 215.3 332 42.5
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.1e-51 208.0 327 43.4
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.5e-51 206.8 305 42.0
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 5.6e-51 205.7 334 38.0
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 9.6e-51 204.9 335 40.3
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.6e-50 204.1 339 41.3
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.0e-49 199.5 336 39.9
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.0e-48 197.2 257 49.4
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.2e-46 189.9 307 40.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 3.1e-41 173.3 583 26.8
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.0e-36 156.8 354 33.1
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.5e-35 153.7 503 27.2
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 6.2e-34 149.1 268 39.2
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 5.3e-33 146.0 323 35.6
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 3.2e-30 136.7 464 25.4
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 5.1e-28 129.4 457 25.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.6e-27 125.2 71 78.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 6.9e-25 119.0 71 77.5
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.5e-22 109.4 71 70.4
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.7e-21 107.1 82 56.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 4.6e-21 106.3 70 70.0
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 6.0e-21 105.9 68 75.0
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.8e-20 104.4 158 39.9
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 4.3e-19 99.8 70 65.7
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 4.3e-19 99.8 69 63.8
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 2.1e-18 97.4 407 25.3
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 2.8e-18 97.1 69 66.7
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 4.8e-18 96.3 69 65.2
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.8e-17 94.4 69 63.8
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.4e-17 94.0 68 66.2
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 4.1e-17 93.2 73 53.4
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 5.3e-17 92.8 105 50.5
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.2e-15 87.4 180 28.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.5e-15 85.5 60 63.3
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-14 85.1 67 53.7
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.3e-10 71.6 456 23.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.7e-10 70.1 72 47.2
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 4.1e-09 66.6 96 39.6
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.7e-07 61.2 72 44.4
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-06 58.5 38 57.9
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.4e-06 58.2 37 73.0


User provided reference genes

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