Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 6.9e-194 680.6 388 100.0
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.9e-159 566.2 390 87.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.0e-124 449.9 406 72.2
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 9.3e-74 281.6 390 46.7
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.9e-72 276.2 389 45.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 9.7e-71 271.6 392 45.2
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.9e-68 262.3 389 43.2
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.9e-66 257.3 390 44.9
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.7e-62 244.2 394 40.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.1e-61 239.6 389 40.9
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.4e-60 236.5 395 39.5
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 5.9e-60 235.7 393 42.2
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 7.7e-60 235.3 393 40.7
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.9e-59 233.4 400 41.0
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.8e-59 233.0 392 41.6
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 5.0e-59 232.6 390 39.7
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 9.4e-58 228.4 415 38.8
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.1e-57 227.3 393 42.0
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.0e-56 224.9 389 40.6
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 6.7e-56 222.2 393 40.2
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.7e-54 217.6 389 38.0
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.1e-53 214.9 391 39.1
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.4e-53 214.5 393 38.7
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 3.1e-53 213.4 390 40.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 5.3e-53 212.6 398 37.9
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 3.5e-52 209.9 420 36.0
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 7.7e-52 208.8 394 38.6
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.9e-51 206.8 392 44.4
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.5e-51 205.3 393 38.7
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 8.5e-51 205.3 401 38.9
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.5e-51 205.3 401 40.1
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.1e-50 204.9 399 38.8
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 4.7e-49 199.5 388 35.3
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 6.1e-49 199.1 378 39.2
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 6.1e-49 199.1 390 37.7
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.1e-49 199.1 410 36.8
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 6.1e-49 199.1 392 36.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 8.0e-49 198.7 374 37.2
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.0e-49 198.7 390 39.0
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.0e-48 198.4 190 57.4
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.0e-48 198.4 190 57.4
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 3.9e-48 196.4 397 36.5
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 6.7e-48 195.7 417 36.5
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 6.7e-48 195.7 390 37.2
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 8.8e-48 195.3 391 36.3
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.3e-47 193.4 427 37.0
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.3e-46 191.4 389 40.1
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.2e-46 190.7 374 37.4
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.8e-46 190.3 374 37.4
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 3.7e-46 189.9 256 44.5
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.7e-46 189.9 393 43.8
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 8.2e-46 188.7 374 37.4
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.4e-45 187.2 384 36.2
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 4.1e-45 186.4 375 37.3
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 9.1e-45 185.3 390 35.4
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 9.1e-45 185.3 391 37.1
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.2e-44 184.9 399 36.6
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.6e-44 184.5 392 37.2
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.5e-44 183.3 256 42.2
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 5.9e-44 182.6 394 36.3
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 5.9e-44 182.6 391 38.1
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 7.7e-44 182.2 395 35.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.0e-43 181.8 371 36.7
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.7e-43 181.0 184 55.4
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.7e-43 181.0 381 35.7
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.5e-43 178.7 384 34.6
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.5e-42 177.9 406 34.5
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.5e-42 177.9 225 47.6
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.9e-42 177.6 391 35.8
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 1.9e-42 177.6 422 34.6
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 7.2e-42 175.6 395 35.7
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.2e-41 174.9 385 36.9
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.2e-41 174.9 391 36.6
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.6e-41 174.5 387 35.1
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.1e-41 174.1 369 36.3
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.1e-41 174.1 394 36.0
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 3.6e-41 173.3 391 35.3
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 4.7e-41 172.9 400 35.2
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.1e-41 172.6 369 33.9
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.0e-40 171.8 391 35.5
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.4e-40 171.4 391 35.5
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.0e-40 170.2 197 52.3
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 4.0e-40 169.9 407 33.4
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 4.0e-40 169.9 403 33.5
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 4.0e-40 169.9 397 36.3
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 5.2e-40 169.5 387 35.4
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 2.0e-39 167.5 392 33.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.2e-38 164.1 202 47.5
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.8e-38 163.7 392 33.9
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.8e-38 162.9 390 34.1
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 6.3e-38 162.5 370 35.9
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-37 161.8 369 32.2
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.8e-37 161.0 381 39.6
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.1e-37 159.8 391 34.3
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.6e-36 157.9 390 32.6
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.6e-36 157.9 372 35.5
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.0e-36 157.5 405 33.8
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.7e-36 157.1 191 48.2
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.5e-36 156.8 198 45.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.7e-36 155.6 179 48.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.0e-35 155.2 190 48.9
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.9e-35 153.7 189 45.0
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.0e-35 152.9 188 46.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 8.5e-35 152.1 423 32.2
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 7.2e-34 149.1 194 45.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.2e-33 148.3 164 50.0
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.8e-32 142.5 369 30.6
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 8.8e-32 142.1 179 47.5
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.4e-31 140.2 361 31.9
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-30 137.9 230 36.5
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 8.3e-30 135.6 391 31.7
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.1e-29 135.2 422 29.4
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 4.1e-29 133.3 174 43.1
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 9.1e-29 132.1 368 32.3
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.2e-28 131.7 250 38.0
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 3.5e-28 130.2 173 44.5
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.3e-27 127.5 221 38.0
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 2.3e-27 127.5 273 34.1
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 2.9e-27 127.1 174 44.8
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.5e-26 124.8 166 45.2
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.5e-26 124.8 166 45.2
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 4.2e-26 123.2 201 40.3
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 5.5e-26 122.9 161 44.7
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 9.5e-26 122.1 139 49.6
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.2e-25 121.7 364 28.3
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.8e-25 120.6 368 30.2
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.6e-25 120.2 187 40.1
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 6.1e-25 119.4 369 29.5
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 6.1e-25 119.4 369 29.5
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.0e-24 118.6 112 61.6
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.4e-24 118.2 245 34.7
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-24 117.9 148 45.3
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.8e-24 117.9 433 29.1
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.3e-24 117.5 307 31.3
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 8.9e-24 115.5 333 30.6
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 8.9e-24 115.5 182 39.6
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.5e-23 114.8 151 42.4
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.6e-23 114.0 360 31.1
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.6e-23 114.0 360 31.1
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 1.7e-22 111.3 392 29.8
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 2.2e-22 110.9 412 26.5
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.2e-21 107.1 360 30.8
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 7.0e-21 105.9 373 29.0
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.2e-20 105.1 117 44.4
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 5.0e-19 99.8 265 40.0
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 8.6e-19 99.0 294 32.7
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.1e-18 98.6 222 31.5
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 5.6e-18 96.3 203 33.0
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.1e-17 92.8 79 57.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 6.1e-17 92.8 391 29.2
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.2e-15 88.6 360 26.4
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 6.4e-14 82.8 136 36.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.1e-13 82.0 51 70.6
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.8e-12 75.9 54 57.4
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.0e-11 73.9 324 25.9
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.8e-08 64.7 158 33.5
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 6.8e-08 62.8 83 45.8
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 9.8e-07 58.9 66 51.5
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 2.2e-06 57.8 93 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.9e-06 57.4 172 32.0
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 4.9e-06 56.6 66 47.0
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 6.4e-06 56.2 90 37.8


User provided reference genes

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