Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 5.3e-179 630.9 325 100.0
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 3.6e-119 432.2 310 72.6
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 1.0e-118 430.6 312 72.4
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 5.4e-115 418.3 310 69.7
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 2.0e-114 416.4 310 69.7
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 2.5e-112 409.5 310 69.0
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 5.5e-112 408.3 310 68.7
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 3.1e-107 392.5 310 64.5
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 4.7e-103 378.6 310 63.9
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.0e-102 377.5 314 61.5
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 3.0e-102 375.9 327 60.9
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 2.0e-101 373.2 311 61.7
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 2.6e-101 372.9 314 60.2
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 3.7e-100 369.0 314 60.5
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 3.2e-99 365.9 314 58.6
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.0e-98 363.2 310 60.6
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 6.6e-97 358.2 311 60.5
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 6.6e-97 358.2 314 58.3
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.9e-96 356.7 310 58.7
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 1.9e-96 356.7 314 58.9
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 4.3e-96 355.5 310 58.4
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 7.3e-96 354.8 310 57.7
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.6e-95 353.6 310 57.7
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 6.2e-95 351.7 314 58.6
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.4e-94 350.5 314 58.9
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 2.3e-94 349.7 310 57.1
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 3.1e-94 349.4 310 58.1
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.8e-94 348.2 310 56.8
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.2e-93 347.4 310 56.8
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 1.3e-92 344.0 310 56.5
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 3.7e-92 342.4 311 58.5
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 5.4e-91 338.6 314 56.7
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 4.6e-90 335.5 312 54.5
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.0e-89 334.3 314 56.1
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 1.3e-89 334.0 314 57.0
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 3.9e-89 332.4 314 55.7
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.9e-89 332.4 310 57.7
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 6.6e-89 331.6 310 57.1
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 6.6e-89 331.6 310 53.5
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 1.1e-88 330.9 314 55.7
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.5e-88 330.5 314 55.7
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 5.6e-88 328.6 311 55.0
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 7.3e-88 328.2 310 56.8
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.2e-87 327.4 310 55.8
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.6e-87 327.0 310 57.1
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.8e-87 326.2 310 56.1
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 1.1e-86 324.3 315 55.6
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 1.2e-85 320.9 310 53.5
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 1.5e-85 320.5 314 53.2
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 3.4e-85 319.3 310 54.5
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 7.5e-85 318.2 312 54.5
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 9.8e-85 317.8 310 54.5
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 9.8e-85 317.8 310 55.2
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 1.1e-83 314.3 313 54.0
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 2.4e-83 313.2 314 53.5
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 5.4e-83 312.0 310 51.3
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 9.2e-83 311.2 314 52.9
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.7e-82 309.7 310 51.3
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 7.8e-82 308.1 310 50.6
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 7.8e-82 308.1 312 51.9
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 1.0e-81 307.8 310 50.0
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 3.9e-81 305.8 275 57.5
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 3.9e-81 305.8 327 49.2
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.1e-80 304.3 310 49.7
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 1.9e-80 303.5 312 53.2
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 9.5e-80 301.2 310 54.5
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 1.2e-79 300.8 310 49.4
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 1.6e-79 300.4 180 86.7
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 1.6e-79 300.4 310 50.0
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 3.6e-79 299.3 315 54.0
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 6.2e-79 298.5 310 54.5
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 1.8e-78 297.0 314 50.0
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 3.1e-78 296.2 315 52.4
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 3.1e-78 296.2 316 51.3
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 8.9e-78 294.7 311 50.5
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 2.6e-77 293.1 310 47.7
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 3.4e-77 292.7 314 51.0
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 4.4e-77 292.4 310 49.4
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 1.3e-76 290.8 310 47.7
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 1.7e-76 290.4 314 49.7
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.7e-76 290.4 310 51.0
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 6.4e-76 288.5 312 50.3
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 1.4e-75 287.3 310 50.3
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 4.1e-75 285.8 309 47.6
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 6.0e-74 282.0 313 51.4
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 5.1e-73 278.9 312 49.7
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 1.9e-72 276.9 330 47.9
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 5.6e-72 275.4 310 47.7
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 7.3e-72 275.0 315 47.3
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.2e-71 274.2 310 47.1
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 4.7e-71 272.3 310 46.8
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 4.0e-70 269.2 338 45.0
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 1.2e-69 267.7 315 46.0
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.4e-69 266.2 310 47.1
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 5.8e-69 265.4 311 46.6
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 3.8e-68 262.7 310 46.1
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 6.4e-68 261.9 337 43.3
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 6.4e-68 261.9 337 43.3
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 8.4e-68 261.5 311 45.7
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 7.1e-67 258.5 337 42.7
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 9.3e-67 258.1 315 47.0
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 3.5e-66 256.1 315 45.7
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 6.0e-66 255.4 321 45.5
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.0e-65 253.1 321 44.5
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.5e-64 250.8 315 46.3
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 4.3e-64 249.2 339 43.7
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 5.6e-64 248.8 310 45.8
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.6e-63 247.3 311 45.3
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.2e-58 231.1 191 61.8
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 4.6e-58 229.2 252 48.4
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 8.1e-47 191.8 209 49.3
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 5.9e-37 159.1 346 34.1
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 2.7e-34 150.2 310 35.5
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 1.8e-30 137.5 98 73.5
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 5.9e-29 132.5 269 33.8
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 6.5e-28 129.0 181 44.8
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 3.3e-24 116.7 313 28.4
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 3.7e-23 113.2 163 37.4
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.0e-20 105.1 307 32.6
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 2.2e-20 104.0 317 27.4
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 2.9e-20 103.6 313 26.8
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.6e-18 97.8 308 26.0
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.6e-18 97.8 308 26.0
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 3.0e-17 93.6 105 46.7
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 2.6e-16 90.5 267 27.3
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 3.5e-13 80.1 219 28.3
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 7.7e-13 79.0 88 50.0
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 1.0e-12 78.6 47 80.9
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 9.4e-11 72.0 197 29.4
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 2.7e-10 70.5 228 27.2
COL.COLO4_31086 Corchorus olitorius HOM05D002504 ORTHO05D007555 8.2e-07 58.9 63 46.0


User provided reference genes

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