Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 2.7e-244 848.2 412 100.0
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 3.9e-211 738.0 426 83.1
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 8.6e-211 736.9 426 82.9
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 4.0e-208 728.0 426 81.0
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.5e-207 726.1 426 80.5
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.6e-207 723.8 426 81.7
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 7.6e-207 723.8 424 82.1
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.4e-205 719.5 426 81.5
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.2e-204 716.5 426 79.1
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.1e-204 715.7 430 80.7
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.7e-204 715.3 426 79.3
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.3e-203 712.2 424 80.9
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 5.1e-203 711.1 427 78.9
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.9e-202 709.1 426 78.9
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 7.3e-202 707.2 427 78.9
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 9.6e-202 706.8 427 78.5
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.2e-201 706.4 420 80.0
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 8.1e-201 703.7 426 78.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.7e-198 696.0 426 77.9
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 4.9e-198 694.5 435 76.1
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 1.4e-197 693.0 426 78.2
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 2.4e-197 692.2 427 78.2
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 3.9e-195 684.9 426 76.8
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 1.5e-194 682.9 426 77.0
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 1.5e-194 682.9 426 77.9
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 2.5e-194 682.2 447 72.9
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.6e-193 679.5 424 77.8
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 2.8e-193 678.7 428 77.1
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 3.6e-193 678.3 428 76.4
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 6.2e-193 677.6 426 77.5
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.1e-192 676.8 426 75.6
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 6.9e-192 674.1 426 75.1
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.9e-190 668.7 426 74.6
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 6.0e-188 661.0 425 73.4
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 7.8e-188 660.6 478 67.6
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.7e-187 659.4 392 79.3
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.3e-187 659.1 426 72.8
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 6.6e-187 657.5 426 72.8
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 8.7e-187 657.1 409 76.0
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 8.7e-187 657.1 427 74.9
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.5e-186 656.4 441 72.1
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.9e-186 656.0 426 73.5
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 4.3e-186 654.8 426 74.2
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.3e-185 653.3 426 72.8
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.8e-185 652.1 427 73.1
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 4.8e-185 651.4 423 73.8
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 6.9e-184 647.5 428 72.4
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 3.4e-183 645.2 449 70.4
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 9.9e-183 643.7 394 78.7
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 9.9e-183 643.7 448 71.2
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.4e-181 639.8 412 74.3
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.9e-181 639.4 418 74.2
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.1e-181 637.5 434 70.7
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.2e-180 636.7 434 70.7
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 2.7e-180 635.6 434 70.5
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 4.3e-178 628.2 426 70.7
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.6e-178 627.9 390 78.7
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 1.1e-176 623.6 428 71.7
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 5.3e-176 621.3 395 75.2
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.2e-174 615.9 412 70.4
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 4.9e-174 614.8 428 70.6
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.1e-173 613.6 424 69.3
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 7.1e-173 610.9 423 68.1
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 3.5e-172 608.6 417 69.3
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 3.5e-172 608.6 429 68.1
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 8.7e-171 604.0 424 69.3
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.9e-170 602.8 394 71.8
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 5.7e-170 601.3 425 68.0
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 9.6e-170 600.5 432 66.7
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 2.8e-169 599.0 428 67.8
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 3.7e-169 598.6 370 77.3
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 6.9e-168 594.3 429 67.1
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.2e-167 593.6 452 65.3
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 5.8e-167 591.3 428 66.8
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 5.8e-167 591.3 428 66.8
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 5.0e-166 588.2 427 67.2
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 5.0e-166 588.2 413 66.8
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 3.5e-164 582.0 428 67.5
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 5.7e-162 574.7 416 66.3
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 9.7e-162 573.9 451 67.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 9.7e-162 573.9 417 69.1
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 6.3e-161 571.2 427 64.2
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 8.2e-161 570.9 410 66.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 8.2e-161 570.9 394 68.8
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.8e-160 569.7 427 64.4
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 4.1e-160 568.5 432 63.9
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 5.3e-160 568.2 427 64.4
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 5.9e-159 564.7 489 59.5
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.7e-156 555.8 424 63.4
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 3.9e-155 552.0 423 62.6
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.4e-152 543.5 412 66.0
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 3.2e-149 532.3 381 69.8
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 1.4e-147 526.9 381 66.7
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.8e-147 526.6 344 72.7
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.7e-145 520.0 426 61.5
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.8e-144 516.5 426 57.0
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.5e-143 512.3 430 63.7
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 1.4e-136 490.3 426 58.0
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 5.0e-134 481.9 393 61.8
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 9.4e-133 477.6 356 62.9
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 2.6e-130 469.5 387 60.5
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.5e-125 453.8 410 59.8
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 2.9e-118 429.5 302 67.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 8.6e-118 427.9 423 52.7
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.2e-116 424.1 405 54.8
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 5.2e-115 418.7 420 50.0
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 4.9e-113 412.1 410 53.7
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.6e-108 397.1 432 50.5
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 8.3e-105 384.8 290 65.5
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.1e-104 384.4 289 65.4
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 2.4e-104 383.3 289 65.4
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 3.0e-102 376.3 434 46.1
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.6e-95 354.0 610 37.4
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 3.4e-90 336.3 432 43.1
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.7e-86 323.9 269 57.6
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 3.0e-86 323.2 675 33.5
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 4.7e-84 315.8 192 73.4
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.2e-81 307.0 284 58.1
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 5.4e-80 302.4 265 57.4
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.6e-55 221.1 317 42.9
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 6.0e-55 219.2 527 32.3
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 1.3e-54 218.0 141 73.0
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.8e-51 207.6 163 66.3
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.9e-48 197.6 122 73.8
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 3.7e-44 183.3 116 71.6
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 6.1e-39 166.0 149 55.0
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 3.6e-31 140.2 288 34.4
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.0e-30 138.7 288 34.4
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 2.3e-30 137.5 84 77.4
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 7.7e-26 122.5 85 65.9
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.8e-25 120.2 69 84.1
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 2.6e-21 107.5 88 61.4
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.7e-20 104.8 57 84.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 5.9e-18 96.3 69 69.6
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 7.5e-13 79.3 73 50.7
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.7e-12 78.2 56 55.4
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.2e-10 72.0 498 21.7
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 2.2e-09 67.8 55 60.0
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 9.5e-08 62.4 44 65.9
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 6.8e-06 56.2 42 52.4


User provided reference genes

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