Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 4.5e-67 258.1 158 100.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 4.4e-54 214.9 157 87.9
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 2.2e-53 212.6 162 84.0
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.2e-53 212.6 151 87.4
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.2e-53 212.6 151 88.7
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.7e-53 211.8 150 86.7
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 6.3e-53 211.1 148 89.2
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.8e-52 209.5 123 87.8
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.8e-52 209.5 123 87.8
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 2.4e-52 209.1 132 87.1
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 2.4e-52 209.1 132 87.1
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 9.1e-52 207.2 152 81.6
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.6e-51 206.5 154 85.7
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.7e-51 205.7 157 82.2
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 3.5e-51 205.3 150 85.3
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 7.7e-51 204.1 152 85.5
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 7.7e-51 204.1 124 87.1
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 7.7e-51 204.1 156 81.4
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.0e-50 203.8 132 83.3
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.3e-50 203.4 157 82.8
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.3e-50 203.4 157 82.8
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.9e-50 202.2 125 84.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.9e-50 202.2 125 84.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 3.8e-50 201.8 125 84.0
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 8.5e-50 200.7 132 81.1
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.9e-49 199.5 126 83.3
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.5e-49 198.0 121 85.1
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 5.5e-49 198.0 156 80.1
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.2e-49 197.6 122 86.9
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.6e-48 196.4 128 82.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.6e-48 196.4 119 86.6
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.6e-48 196.4 121 85.1
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-48 196.4 122 86.9
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.1e-48 196.1 155 80.0
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.1e-48 196.1 122 86.1
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 4.7e-48 194.9 121 83.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 4.7e-48 194.9 127 83.5
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 8.0e-48 194.1 159 81.8
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 8.0e-48 194.1 126 82.5
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.0e-47 193.7 159 78.6
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.0e-47 193.7 158 81.0
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.4e-47 193.4 123 83.7
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 1.8e-47 193.0 125 81.6
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.8e-47 193.0 121 83.5
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.3e-47 192.6 120 84.2
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 2.3e-47 192.6 124 82.3
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 3.0e-47 192.2 149 82.6
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 3.0e-47 192.2 158 79.7
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 5.2e-47 191.4 125 80.8
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 8.8e-47 190.7 152 82.2
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 8.8e-47 190.7 122 83.6
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.2e-46 190.3 149 82.6
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.5e-46 189.9 132 78.0
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 2.0e-46 189.5 121 81.8
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 2.6e-46 189.1 132 79.5
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 3.4e-46 188.7 148 77.7
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 4.4e-46 188.3 127 81.9
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 4.4e-46 188.3 124 79.8
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 5.7e-46 188.0 135 77.8
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 7.5e-46 187.6 145 79.3
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.7e-45 186.4 130 73.8
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 2.2e-45 186.0 148 72.3
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.8e-45 185.7 124 76.6
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 2.8e-45 185.7 126 80.2
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.7e-45 185.3 118 83.1
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.7e-45 185.3 118 83.1
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 3.7e-45 185.3 124 76.6
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 3.7e-45 185.3 128 77.3
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 3.7e-45 185.3 123 78.0
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 4.8e-45 184.9 154 72.7
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 4.8e-45 184.9 148 74.3
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 6.3e-45 184.5 130 78.5
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 8.3e-45 184.1 145 75.2
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 8.3e-45 184.1 130 79.2
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 1.1e-44 183.7 130 73.1
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.1e-44 183.7 130 73.1
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.1e-44 183.7 130 73.1
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.4e-44 182.6 133 73.7
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.4e-44 182.6 130 72.3
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 3.1e-44 182.2 148 76.4
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 3.1e-44 182.2 161 76.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.1e-44 181.8 124 74.2
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 5.4e-44 181.4 122 75.4
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 7.0e-44 181.0 124 73.4
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 7.0e-44 181.0 130 71.5
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 7.0e-44 181.0 158 74.7
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 9.1e-44 180.6 124 75.0
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.2e-43 180.3 124 73.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.2e-43 180.3 133 72.2
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.6e-43 179.9 124 75.0
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.0e-43 179.5 123 74.0
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 2.0e-43 179.5 127 78.7
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 4.5e-43 178.3 124 73.4
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 4.5e-43 178.3 147 66.0
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.9e-43 177.9 122 73.8
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 5.9e-43 177.9 145 74.5
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 7.7e-43 177.6 124 72.6
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.0e-42 177.2 124 72.6
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.0e-42 177.2 124 72.6
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.0e-42 177.2 124 72.6
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.2e-42 176.0 122 73.0
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 3.8e-42 175.3 125 72.8
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 5.0e-42 174.9 157 77.1
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 5.0e-42 174.9 126 72.2
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.9e-41 172.9 122 73.8
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 7.2e-41 171.0 130 71.5
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.6e-40 169.9 131 68.7
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 3.6e-40 168.7 145 69.7
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 6.1e-40 167.9 145 60.7
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.0e-39 167.2 124 70.2
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 5.2e-39 164.9 127 68.5
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 8.8e-39 164.1 123 65.9
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 1.2e-38 163.7 99 86.9
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 4.4e-38 161.8 195 52.3
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 5.7e-38 161.4 123 68.3
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.7e-37 159.8 103 83.5
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 3.7e-37 158.7 106 77.4
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.8e-36 156.4 98 83.7
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 4.1e-36 155.2 123 68.3
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 4.1e-36 155.2 98 84.7
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 4.1e-36 155.2 123 65.9
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.0e-36 154.5 96 84.4
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-33 147.1 94 84.0
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.0e-31 140.6 124 58.1
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.8e-31 139.8 123 57.7
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 4.0e-31 138.7 123 56.9
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 6.8e-31 137.9 124 58.1
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 3.7e-29 132.1 82 85.4
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.3e-26 123.6 119 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 6.6e-26 121.3 121 50.4
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 2.8e-24 115.9 93 64.5
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 2.8e-24 115.9 93 64.5
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.4e-23 113.6 79 74.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.0e-23 112.1 106 62.3
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.9e-20 103.2 96 65.6
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 4.6e-19 98.6 68 75.0
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 8.3e-13 77.8 51 70.6
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 7.1e-12 74.7 70 65.7
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 9.2e-12 74.3 83 59.0
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 9.2e-12 74.3 83 59.0
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.9e-09 66.6 50 68.0


User provided reference genes

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