Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 2.6e-17 90.9 43 100.0
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 3.5e-14 80.5 43 88.4
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 1.0e-13 79.0 43 86.0
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 1.3e-13 78.6 43 81.4
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 3.9e-13 77.0 43 81.4
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 2.5e-12 74.3 43 76.7
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 2.5e-12 74.3 43 76.7
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 2.5e-12 74.3 43 76.7
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 3.3e-12 73.9 43 79.1
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 3.3e-12 73.9 43 76.7
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 3.3e-12 73.9 43 76.7
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 3.3e-12 73.9 43 76.7
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 4.3e-12 73.6 43 74.4
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 4.3e-12 73.6 43 76.7
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 5.6e-12 73.2 43 74.4
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 5.6e-12 73.2 43 74.4
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 7.3e-12 72.8 43 74.4
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 7.3e-12 72.8 43 74.4
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 9.5e-12 72.4 43 79.1
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 2.1e-11 71.2 43 76.7
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 2.1e-11 71.2 43 72.1
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 2.1e-11 71.2 43 74.4
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 2.1e-11 71.2 43 74.4
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 2.8e-11 70.9 43 72.1
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 3.6e-11 70.5 43 72.1
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 3.6e-11 70.5 43 69.8
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 6.2e-11 69.7 43 69.8
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 6.2e-11 69.7 43 74.4
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 6.2e-11 69.7 43 69.8
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 6.2e-11 69.7 43 69.8
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 1.1e-10 68.9 43 74.4
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.1e-10 68.9 43 74.4
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.4e-10 68.6 43 67.4
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 1.4e-10 68.6 43 74.4
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 1.4e-10 68.6 43 72.1
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 1.4e-10 68.6 43 72.1
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 1.4e-10 68.6 43 72.1
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.8e-10 68.2 43 67.4
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.8e-10 68.2 43 67.4
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 1.8e-10 68.2 42 71.4
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 2.3e-10 67.8 43 65.1
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 2.3e-10 67.8 43 72.1
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 2.3e-10 67.8 42 69.0
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 3.1e-10 67.4 42 69.0
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 3.1e-10 67.4 43 67.4
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 4.0e-10 67.0 43 74.4
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 4.0e-10 67.0 43 74.4
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 5.2e-10 66.6 43 69.8
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 5.2e-10 66.6 43 69.8
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 5.2e-10 66.6 43 67.4
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 6.8e-10 66.2 43 74.4
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 6.8e-10 66.2 43 67.4
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 6.8e-10 66.2 43 67.4
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 6.8e-10 66.2 43 65.1
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 6.8e-10 66.2 43 69.8
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 6.8e-10 66.2 43 69.8
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 8.9e-10 65.9 43 69.8
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 8.9e-10 65.9 43 67.4
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 8.9e-10 65.9 43 69.8
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 8.9e-10 65.9 43 67.4
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.5e-09 65.1 40 72.5
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.5e-09 65.1 43 69.8
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 3.4e-09 63.9 43 65.1
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 3.4e-09 63.9 43 67.4
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 4.4e-09 63.5 43 76.7
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 7.6e-09 62.8 43 67.4
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 7.6e-09 62.8 43 65.1
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 9.9e-09 62.4 43 69.8
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 1.3e-08 62.0 43 65.1
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.3e-08 62.0 43 67.4
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 1.3e-08 62.0 43 67.4
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 1.3e-08 62.0 43 62.8
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 1.7e-08 61.6 43 65.1
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 2.2e-08 61.2 43 62.8
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 2.9e-08 60.8 43 60.5
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 2.9e-08 60.8 43 65.1
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 3.7e-08 60.5 43 55.8
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 3.7e-08 60.5 43 55.8
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 6.4e-08 59.7 50 60.0
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 6.4e-08 59.7 43 62.8
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 6.4e-08 59.7 43 62.8
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 6.4e-08 59.7 43 62.8
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 1.1e-07 58.9 43 62.8
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 1.1e-07 58.9 43 60.5
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 1.4e-07 58.5 43 60.5
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 1.9e-07 58.2 43 60.5
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 1.9e-07 58.2 43 55.8
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 1.9e-07 58.2 43 55.8
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 3.2e-07 57.4 43 53.5
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 5.4e-07 56.6 43 60.5
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 7.1e-07 56.2 43 60.5
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 9.2e-07 55.8 43 60.5
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 9.2e-07 55.8 43 60.5
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 9.2e-07 55.8 43 60.5
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 9.2e-07 55.8 43 62.8
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 1.2e-06 55.5 43 58.1
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 2.7e-06 54.3 43 58.1
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 6.0e-06 53.1 43 55.8
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 6.0e-06 53.1 43 55.8
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 6.0e-06 53.1 43 55.8
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 7.8e-06 52.8 43 58.1


User provided reference genes

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