Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 1.1e-30 136.0 69 100.0
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 4.3e-30 134.0 69 98.6
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 9.5e-30 132.9 69 97.1
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.6e-29 132.1 69 97.1
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 1.4e-25 119.0 69 85.5
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 3.2e-25 117.9 67 85.1
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.2e-24 115.9 69 82.6
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.6e-24 115.5 69 82.6
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 2.7e-24 114.8 69 81.2
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 2.7e-24 114.8 69 81.2
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 7.8e-24 113.2 70 84.3
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 1.0e-23 112.8 69 81.2
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 2.3e-23 111.7 69 79.7
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 2.3e-23 111.7 69 79.7
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 2.3e-23 111.7 70 82.9
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 3.0e-23 111.3 69 79.7
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 3.9e-23 110.9 68 83.8
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 3.9e-23 110.9 69 81.2
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.2e-21 105.9 69 75.4
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 2.1e-21 105.1 69 75.4
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 2.8e-21 104.8 69 75.4
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.6e-21 104.4 68 73.5
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.6e-21 104.4 69 73.9
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 1.1e-20 102.8 69 73.9
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 1.8e-20 102.1 67 73.1
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 3.1e-20 101.3 69 78.3
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 4.0e-20 100.9 67 79.1
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 5.2e-20 100.5 64 76.6
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 8.9e-20 99.8 69 76.8
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 8.9e-20 99.8 69 73.9
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 8.9e-20 99.8 62 77.4
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 8.9e-20 99.8 64 76.6
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 1.2e-19 99.4 69 72.5
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 1.5e-19 99.0 57 84.2
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 2.0e-19 98.6 69 76.8
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 2.6e-19 98.2 64 75.0
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 2.6e-19 98.2 63 79.4
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 3.4e-19 97.8 69 68.1
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 4.4e-19 97.4 59 79.7
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 5.8e-19 97.1 64 76.6
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 5.8e-19 97.1 69 69.6
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 7.6e-19 96.7 69 71.0
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 9.9e-19 96.3 59 79.7
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 9.9e-19 96.3 69 73.9
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 9.9e-19 96.3 67 71.6
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 9.9e-19 96.3 64 73.4
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 1.7e-18 95.5 69 75.4
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.2e-18 95.1 59 78.0
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.2e-18 95.1 59 78.0
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.9e-18 94.7 57 82.5
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.9e-18 94.7 57 82.5
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 4.9e-18 94.0 69 68.1
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 6.4e-18 93.6 69 73.9
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 6.4e-18 93.6 69 73.9
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 8.4e-18 93.2 59 78.0
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 8.4e-18 93.2 69 71.0
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 1.9e-17 92.0 59 74.6
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.9e-17 92.0 61 77.0
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 1.9e-17 92.0 69 66.7
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 2.4e-17 91.7 69 71.0
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 3.2e-17 91.3 56 78.6
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 3.2e-17 91.3 59 74.6
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 7.1e-17 90.1 58 77.6
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 7.1e-17 90.1 69 69.6
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 1.2e-16 89.4 69 71.0
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 1.2e-16 89.4 61 75.4
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 1.6e-16 89.0 55 81.8
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 1.6e-16 89.0 69 69.6
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 1.6e-16 89.0 69 68.1
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 1.6e-16 89.0 69 68.1
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 1.6e-16 89.0 69 68.1
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 1.6e-16 89.0 59 74.6
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 2.1e-16 88.6 69 68.1
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 2.1e-16 88.6 67 65.7
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 2.1e-16 88.6 67 65.7
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 2.1e-16 88.6 67 65.7
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 2.7e-16 88.2 55 76.4
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 2.7e-16 88.2 67 64.2
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 4.6e-16 87.4 56 75.0
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 4.6e-16 87.4 69 65.2
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 4.6e-16 87.4 67 64.2
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 6.0e-16 87.0 62 72.6
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 6.0e-16 87.0 69 66.7
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 6.0e-16 87.0 58 72.4
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 7.8e-16 86.7 58 74.1
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.0e-15 86.3 58 74.1
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.3e-15 85.9 55 74.5
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 1.3e-15 85.9 59 74.6
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 1.7e-15 85.5 61 68.9
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 1.7e-15 85.5 52 76.9
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 2.3e-15 85.1 62 71.0
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 2.3e-15 85.1 62 74.2
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 2.3e-15 85.1 62 74.2
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 3.0e-15 84.7 61 67.2
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 6.6e-15 83.6 64 67.2
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 1.1e-14 82.8 62 69.4
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 1.1e-14 82.8 62 69.4
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 1.1e-14 82.8 62 69.4
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.9e-14 82.0 57 68.4
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 2.5e-14 81.6 63 69.8
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 4.3e-14 80.9 61 65.6
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 9.6e-14 79.7 50 78.0
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 2.8e-13 78.2 47 83.0
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 2.4e-12 75.1 45 80.0
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 1.5e-11 72.4 48 68.8
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 4.5e-11 70.9 42 76.2
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 2.4e-09 65.1 51 60.8
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 2.1e-08 62.0 46 65.2
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 3.9e-07 57.8 63 52.4


User provided reference genes

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