Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P637T54 Lonicera japonica HOM05D000268 ORTHO05D000261 3.4e-59 231.5 120 100.0
Dinv29791 Davidia involucrata HOM05D000268 ORTHO05D000261 6.3e-29 131.0 116 59.5
CsaV3_3G011580 Cucumis sativus L. HOM05D000268 ORTHO05D000261 1.8e-28 129.4 116 63.8
ClCG05G003910 Citrullus lanatus HOM05D000268 ORTHO05D000261 7.0e-28 127.5 116 63.8
MELO3C006367.2 Cucumis melo HOM05D000268 ORTHO05D000261 1.2e-27 126.7 116 62.1
Prupe.1G050800 Prunus persica HOM05D000268 ORTHO05D000261 4.5e-27 124.8 116 57.8
Sed0025352 Sechium edule HOM05D000268 ORTHO05D000261 1.7e-26 122.9 116 61.2
CSS0000651 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D000261 2.9e-26 122.1 117 58.1
MD13G1224000 Malus domestica HOM05D000268 ORTHO05D000261 2.9e-26 122.1 116 56.9
Ciclev10004481m.g Citrus clementina HOM05D000268 ORTHO05D000261 8.5e-26 120.6 116 56.9
Potri.008G173100 Populus trichocarpa HOM05D000268 ORTHO05D000261 1.5e-25 119.8 122 59.0
MD16G1228800 Malus domestica HOM05D000268 ORTHO05D000261 1.9e-25 119.4 116 56.0
Sabra08G0132200 Salix brachista HOM05D000268 ORTHO05D000261 2.5e-25 119.0 122 58.2
Hma1.2p1_0385F.1_g141630 Hydrangea macrophylla HOM05D000268 ORTHO05D000261 3.2e-25 118.6 117 59.8
Cfa014801 Carpinus fangiana HOM05D000268 ORTHO05D000261 9.4e-25 117.1 130 56.9
Manes.03G157200 Manihot esculenta HOM05D000268 ORTHO05D000261 9.4e-25 117.1 117 56.4
Potri.010G064300 Populus trichocarpa HOM05D000268 ORTHO05D000261 2.1e-24 115.9 124 58.1
CiPaw.02G105700 Carya illinoinensis HOM05D000268 ORTHO05D000261 4.7e-24 114.8 120 55.8
CiPaw.01G176500 Carya illinoinensis HOM05D000268 ORTHO05D000261 6.1e-24 114.4 121 59.5
CSS0002303 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D000261 8.0e-24 114.0 116 56.9
Haze_11484 Corylus avellana HOM05D000268 ORTHO05D000261 1.4e-23 113.2 130 56.2
Manes.15G046600 Manihot esculenta HOM05D000268 ORTHO05D000261 2.3e-23 112.5 117 53.8
Nitab4.5_0001041g0040 Nicotiana tabacum HOM05D000268 ORTHO05D000261 6.7e-23 110.9 126 50.0
Atru.chr4.1897 Acer truncatum HOM05D000268 ORTHO05D000261 8.8e-23 110.5 116 53.4
Gohir.D09G231800 Gossypium hirsutum HOM05D000268 ORTHO05D000261 1.2e-22 110.2 130 50.0
Gohir.A09G230700 Gossypium hirsutum HOM05D000268 ORTHO05D000261 1.5e-22 109.8 130 50.0
Gorai.006G254500 Gossypium raimondii HOM05D000268 ORTHO05D000261 1.5e-22 109.8 130 50.0
Nitab4.5_0005154g0080 Nicotiana tabacum HOM05D000268 ORTHO05D000261 2.0e-22 109.4 126 50.0
Peaxi162Scf00531g00022 Petunia axillaris HOM05D000268 ORTHO05D000261 2.0e-22 109.4 123 51.2
Lsat_1_v5_gn_6_66121 Lactuca sativa HOM05D000268 ORTHO05D000261 2.6e-22 109.0 118 53.4
Sed0003374 Sechium edule HOM05D000268 ORTHO05D000261 2.6e-22 109.0 117 55.6
Sc19g0005590 Simmondsia chinensis HOM05D000268 ORTHO05D000261 2.6e-22 109.0 112 51.8
Thecc.04G267800 Theobroma cacao HOM05D000268 ORTHO05D000261 4.4e-22 108.2 130 50.8
GSVIVG01027942001 Vitis vinifera HOM05D000268 ORTHO05D000261 4.4e-22 108.2 117 54.7
PGSC0003DMG400029251 Solanum tuberosum HOM05D000268 ORTHO05D000261 9.7e-22 107.1 117 53.0
TAR636G3135 Trochodendron aralioides HOM05D000268 ORTHO05D000261 9.7e-22 107.1 116 52.6
Duzib151G0214 Durio zibethinus HOM05D000268 ORTHO05D000261 1.7e-21 106.3 130 49.2
Sc13g0003070 Simmondsia chinensis HOM05D000268 ORTHO05D000261 2.2e-21 105.9 106 52.8
Lsat_1_v5_gn_2_41661 Lactuca sativa HOM05D000268 ORTHO05D000261 2.8e-21 105.5 119 52.9
Actinidia35819 Actinidia chinensis HOM05D000268 ORTHO05D000261 3.7e-21 105.1 117 55.6
Solyc12g096990.2 Solanum lycopersicum HOM05D000268 ORTHO05D000261 3.7e-21 105.1 117 52.1
Sopen12g032800 Solanum pennellii HOM05D000268 ORTHO05D000261 6.3e-21 104.4 117 52.1
Lj3P638T33 Lonicera japonica HOM05D000268 ORTHO05D000261 8.3e-21 104.0 98 61.2
Actinidia20843 Actinidia chinensis HOM05D000268 ORTHO05D000261 1.4e-20 103.2 121 52.1
AUR62035377 Chenopodium quinoa HOM05D000268 ORTHO05D000261 1.8e-20 102.8 125 50.4
COL.COLO4_15991 Corchorus olitorius HOM05D000268 ORTHO05D000261 1.8e-20 102.8 123 48.8
Sabra10G0042700 Salix brachista HOM05D000268 ORTHO05D000261 2.4e-20 102.4 124 56.5
AUR62035868 Chenopodium quinoa HOM05D000268 ORTHO05D000261 4.1e-20 101.7 123 49.6
MSTRG.9848 Avicennia marina HOM05D000268 ORTHO05D000261 7.0e-20 100.9 119 52.9
TAR365G0169 Trochodendron aralioides HOM05D000268 ORTHO05D000261 7.0e-20 100.9 116 51.7
TAR365G0741 Trochodendron aralioides HOM05D000268 ORTHO05D000261 7.0e-20 100.9 116 51.7
Cc03_g06530 Coffea canephora HOM05D000268 ORTHO05D000261 1.2e-19 100.1 118 48.3
HanXRQChr06g0179861 Helianthus annuus HOM05D000268 ORTHO05D000261 1.2e-19 100.1 119 52.1
Ah.04g153820 Amaranthus hybridus HOM05D000268 ORTHO05D000261 1.6e-19 99.8 118 50.8
RcHm_v2.0_Chr4g0395951 Rosa chinensis HOM05D000268 ORTHO05D000261 2.0e-19 99.4 124 46.8
unitig_21.g20145 Utricularia gibba HOM05D000268 ORTHO05D000261 2.0e-19 99.4 123 51.2
CAN.G812.24 Capsicum annuum HOM05D000268 ORTHO05D000261 3.5e-19 98.6 94 53.2
MSTRG.21929 Avicennia marina HOM05D000268 ORTHO05D000261 4.5e-19 98.2 118 48.3
TWI09G1412 Tripterygium wilfordii HOM05D000268 ORTHO05D000261 4.5e-19 98.2 117 51.3
PGSC0003DMG400001557 Solanum tuberosum HOM05D000268 ORTHO05D000261 5.9e-19 97.8 125 44.8
EL10Ac3g06683 Beta vulgaris HOM05D000268 ORTHO05D000261 1.0e-18 97.1 118 49.2
Actinidia11379 Actinidia chinensis HOM05D000268 ORTHO05D000261 1.3e-18 96.7 129 45.7
CAN.G566.12 Capsicum annuum HOM05D000268 ORTHO05D000261 1.3e-18 96.7 122 47.5
FvH4_2g20121 Fragaria vesca HOM05D000268 ORTHO05D000261 1.3e-18 96.7 123 48.0
Oeu020136.1 Olea europaea HOM05D000268 ORTHO05D000261 1.3e-18 96.7 119 48.7
Oeu047120.1 Olea europaea HOM05D000268 ORTHO05D000261 1.3e-18 96.7 119 48.7
CANSAT78G0364 Cannabis sativa HOM05D000268 ORTHO05D000261 1.7e-18 96.3 105 51.4
Cpa.g.c29644 Carica papaya HOM05D000268 ORTHO05D000261 2.2e-18 95.9 116 46.6
FAN24G1757 Fragaria x ananassa HOM05D000268 ORTHO05D000261 2.2e-18 95.9 125 46.4
Solyc09g090810.3 Solanum lycopersicum HOM05D000268 ORTHO05D000261 2.2e-18 95.9 125 42.4
Sopen09g033760 Solanum pennellii HOM05D000268 ORTHO05D000261 2.2e-18 95.9 125 42.4
TWI73G0478 Tripterygium wilfordii HOM05D000268 ORTHO05D000261 2.2e-18 95.9 103 51.5
Duzib052G0682 Durio zibethinus HOM05D000268 ORTHO05D000261 2.9e-18 95.5 122 48.4
Migut.G00583 Erythranthe guttata HOM05D000268 ORTHO05D000261 5.0e-18 94.7 117 50.4
unitig_744.g24612 Utricularia gibba HOM05D000268 ORTHO05D000261 5.0e-18 94.7 123 48.0
Rhsim09G0039500 Rhododendron simsii HOM05D000268 ORTHO05D000261 1.9e-17 92.8 118 50.0
Rhsim09G0039800 Rhododendron simsii HOM05D000268 ORTHO05D000261 1.9e-17 92.8 118 50.0
Eucgr.H00117 Eucalyptus grandis HOM05D000268 ORTHO05D000261 2.5e-17 92.4 118 51.7
QL06p021633 Quercus lobata HOM05D000268 ORTHO05D000261 2.5e-17 92.4 113 50.4
vmacro00544 Vaccinium macrocarpon HOM05D000268 ORTHO05D000261 4.2e-17 91.7 123 47.2
TAR362G0571 Trochodendron aralioides HOM05D000268 ORTHO05D000261 5.5e-17 91.3 115 47.8
Migut.N00317 Erythranthe guttata HOM05D000268 ORTHO05D000261 3.6e-16 88.6 120 47.5
Rhsim02G0047800 Rhododendron simsii HOM05D000268 ORTHO05D000261 4.7e-16 88.2 101 47.5
MSTRG.4188 Avicennia marina HOM05D000268 ORTHO05D000261 6.1e-16 87.8 121 47.1
HanXRQChr02g0059261 Helianthus annuus HOM05D000268 ORTHO05D000261 6.1e-16 87.8 122 48.4
unitig_899.g15553 Utricularia gibba HOM05D000268 ORTHO05D000261 1.0e-15 87.0 116 44.8
SalBow2G2284 Salvia bowleyana HOM05D000268 ORTHO05D000261 1.4e-15 86.7 101 54.5
Ca_12509_v3 Cicer arietinum L. HOM05D000268 ORTHO05D000261 5.2e-15 84.7 125 44.0
Nitab4.5_0001998g0090 Nicotiana tabacum HOM05D000268 ORTHO05D000261 6.8e-15 84.3 82 52.4
Aqoxy5G00123 Aquilegia oxysepala HOM05D000268 ORTHO05D000261 1.2e-14 83.6 120 44.2
Peaxi162Scf00169g00016 Petunia axillaris HOM05D000268 ORTHO05D000261 1.5e-14 83.2 92 52.2
Lsat_1_v5_gn_1_75420 Lactuca sativa HOM05D000268 ORTHO05D000261 2.0e-14 82.8 122 45.9
Oeu002935.1 Olea europaea HOM05D000268 ORTHO05D000261 2.6e-14 82.4 119 45.4
CDE02G3055 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 3.4e-14 82.0 117 41.0
SGA_v2.0_scaffold67G22674 Striga asiatica HOM05D000268 ORTHO05D000261 3.4e-14 82.0 120 45.0
PGR004G0958 Punica granatum HOM05D000268 ORTHO05D000261 5.7e-14 81.3 92 53.3
SalBow3G0500 Salvia bowleyana HOM05D000268 ORTHO05D000261 5.7e-14 81.3 121 42.1
SalBow3G1498 Salvia bowleyana HOM05D000268 ORTHO05D000261 5.7e-14 81.3 121 42.1
TPR.G11176 Trifolium pratense HOM05D000268 ORTHO05D000261 5.7e-14 81.3 121 43.0
DCAR_030765 Daucus carota HOM05D000268 ORTHO05D000261 9.8e-14 80.5 86 48.8
Phvul.003G007700 Phaseolus vulgaris HOM05D000268 ORTHO05D000261 9.8e-14 80.5 98 49.0
Psat6g097760 Pisum sativum HOM05D000268 ORTHO05D000261 9.8e-14 80.5 123 42.3
SGA_v2.0_scaffold285G47045 Striga asiatica HOM05D000268 ORTHO05D000261 9.8e-14 80.5 99 43.4
Ah.13g074690 Amaranthus hybridus HOM05D000268 ORTHO05D000261 1.3e-13 80.1 68 55.9
Sp7g11030 Schrenkiella parvula HOM05D000268 ORTHO05D000261 1.7e-13 79.7 127 44.1
Carub.0007s2909 Capsella rubella HOM05D000268 ORTHO05D000261 2.8e-13 79.0 121 43.0
DCAR_027356 Daucus carota HOM05D000268 ORTHO05D000261 2.8e-13 79.0 124 42.7
VMungo1215G0849 Vigna mungo HOM05D000268 ORTHO05D000261 2.8e-13 79.0 98 48.0
Oeu043424.3 Olea europaea HOM05D000268 ORTHO05D000261 4.8e-13 78.2 120 44.2
AL9U10080 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 8.3e-13 77.4 128 43.0
Eucgr.H02900 Eucalyptus grandis HOM05D000268 ORTHO05D000261 8.3e-13 77.4 120 45.0
Thhalv10027300m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 8.3e-13 77.4 124 41.9
Aa31LG9G4180 Aethionema arabicum HOM05D000268 ORTHO05D000261 1.1e-12 77.0 94 47.9
Glyma.20G005400 Glycine max HOM05D000268 ORTHO05D000261 1.1e-12 77.0 98 48.0
Lj2g0027286 Lotus japonicus HOM05D000268 ORTHO05D000261 1.1e-12 77.0 121 45.5
Nn1g03002 Nelumbo nucifera HOM05D000268 ORTHO05D000261 1.1e-12 77.0 117 41.0
PSO832G0341 Papaver somniferum HOM05D000268 ORTHO05D000261 1.1e-12 77.0 92 44.6
C08p29380 Brassica napus HOM05D000268 ORTHO05D000261 1.4e-12 76.6 122 45.1
BolC8t50539H Brassica oleracea HOM05D000268 ORTHO05D000261 1.4e-12 76.6 122 45.1
HanXRQChr11g0342371 Helianthus annuus HOM05D000268 ORTHO05D000261 1.4e-12 76.6 108 44.4
Nn3g19808 Nelumbo nucifera HOM05D000268 ORTHO05D000261 1.8e-12 76.3 101 42.6
A09p47120 Brassica napus HOM05D000268 ORTHO05D000261 2.4e-12 75.9 122 45.1
BraA09t40174Z Brassica rapa HOM05D000268 ORTHO05D000261 2.4e-12 75.9 122 45.1
THA.LOC104826099 Tarenaya hassleriana HOM05D000268 ORTHO05D000261 3.1e-12 75.5 128 39.8
Lalb_Chr10g0095181 Lupinus albus HOM05D000268 ORTHO05D000261 4.1e-12 75.1 129 44.2
PSO764G0212 Papaver somniferum HOM05D000268 ORTHO05D000261 4.1e-12 75.1 93 46.2
Aa31LG5G4170 Aethionema arabicum HOM05D000268 ORTHO05D000261 7.0e-12 74.3 130 39.2
BcaNung01176 Brassica carinata HOM05D000268 ORTHO05D000261 1.6e-11 73.2 128 40.6
Ah.13g074700 Amaranthus hybridus HOM05D000268 ORTHO05D000261 3.5e-11 72.0 123 37.4
Ca_22523_v3 Cicer arietinum L. HOM05D000268 ORTHO05D000261 3.5e-11 72.0 82 51.2
ECA233G5415 Erigeron canadensis HOM05D000268 ORTHO05D000261 3.5e-11 72.0 99 48.5
Sc25g0004850 Simmondsia chinensis HOM05D000268 ORTHO05D000261 7.7e-11 70.9 116 41.4
Glyma.16G100200 Glycine max HOM05D000268 ORTHO05D000261 2.3e-10 69.3 117 41.9
AT4G13460 Arabidopsis thaliana HOM05D000268 ORTHO05D000261 5.0e-10 68.2 127 40.2
arahy.Tifrunner.gnm1.ann1.8B0ZRL Arachis hypogaea HOM05D000268 ORTHO05D000261 5.0e-10 68.2 79 49.4
arahy.Tifrunner.gnm1.ann1.E6VYRG Arachis hypogaea HOM05D000268 ORTHO05D000261 5.0e-10 68.2 79 49.4
Lj4g0007757 Lotus japonicus HOM05D000268 ORTHO05D000261 8.6e-10 67.4 83 48.2
ECA248G0344 Erigeron canadensis HOM05D000268 ORTHO05D000261 1.1e-09 67.0 118 39.0
Medtr1g035420 Medicago truncatula HOM05D000268 ORTHO05D000261 1.1e-09 67.0 119 37.0
vmacro15487 Vaccinium macrocarpon HOM05D000268 ORTHO05D000261 1.1e-09 67.0 72 51.4
MBI07_g21056_MAGBIO Magnolia biondii HOM05D000268 ORTHO05D000261 1.5e-09 66.6 117 38.5
Phvul.003G282200 Phaseolus vulgaris HOM05D000268 ORTHO05D000261 1.9e-09 66.2 110 41.8
HPP92_025554 Vanilla planifolia HOM05D000268 ORTHO05D000261 3.3e-09 65.5 96 42.7
HPP92_005012 Vanilla planifolia HOM05D000268 ORTHO05D000261 4.2e-09 65.1 87 44.8
Oeu059385.1 Olea europaea HOM05D000268 ORTHO05D000261 5.5e-09 64.7 92 45.7
Os07g0435900 Oryza sativa ssp. japonica HOM05D000268 ORTHO05D000261 7.2e-09 64.3 82 47.6
MBI10_g16822_MAGBIO Magnolia biondii HOM05D000268 ORTHO05D000261 1.2e-08 63.5 117 34.2
arahy.Tifrunner.gnm1.ann1.TB4ASA Arachis hypogaea HOM05D000268 ORTHO05D000261 2.1e-08 62.8 73 46.6
CDE01G0536 Ceratophyllum demersum HOM05D000268 ORTHO05D000261 2.8e-08 62.4 88 42.0
Medtr8g070070 Medicago truncatula HOM05D000268 ORTHO05D000261 3.6e-08 62.0 70 50.0
arahy.Tifrunner.gnm1.ann1.G2C68E Arachis hypogaea HOM05D000268 ORTHO05D000261 6.1e-08 61.2 73 45.2
VMungo0251G3249 Vigna mungo HOM05D000268 ORTHO05D000261 1.0e-07 60.5 123 36.6
Zm00001eb096860 Zea mays HOM05D000268 ORTHO05D000261 1.8e-07 59.7 109 38.5
Lalb_Chr09g0334551 Lupinus albus HOM05D000268 ORTHO05D000261 2.3e-07 59.3 67 44.8
BcaB06g28664 Brassica carinata HOM05D000268 ORTHO05D000261 4.0e-07 58.5 67 41.8
CDE02G4346 Ceratophyllum demersum HOM05D000268 ORTHO05D000261 4.0e-07 58.5 122 36.9
Lalb_Chr05g0229101 Lupinus albus HOM05D000268 ORTHO05D000261 4.0e-07 58.5 78 41.0
Medtr8g070075 Medicago truncatula HOM05D000268 ORTHO05D000261 4.0e-07 58.5 74 47.3
AT2G33290 Arabidopsis thaliana HOM05D000268 ORTHO05D000261 4.4e-06 55.1 130 35.4
arahy.Tifrunner.gnm1.ann1.R25YV0 Arachis hypogaea HOM05D000268 ORTHO05D000261 4.4e-06 55.1 74 41.9
TPR.G24784 Trifolium pratense HOM05D000268 ORTHO05D000261 7.5e-06 54.3 129 31.8


User provided reference genes

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