Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 0.0e+00 1838.2 897 100.0
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1282.7 901 71.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1269.6 906 70.2
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 0.0e+00 1217.2 900 68.7
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 0.0e+00 1213.0 899 67.9
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 0.0e+00 1211.8 901 68.1
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1198.7 888 68.7
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1184.5 886 68.1
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 0.0e+00 1157.9 905 65.2
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 0.0e+00 1146.3 901 65.9
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 4.2e-303 1044.6 771 67.4
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 3.8e-264 915.2 939 53.6
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.2e-262 910.2 920 54.1
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 5.2e-261 904.8 926 53.1
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.2e-259 899.4 923 53.5
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.5e-252 876.7 927 51.8
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.6e-252 875.9 921 52.1
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 2.6e-252 875.9 920 51.6
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 7.5e-252 874.4 919 51.9
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 9.8e-252 874.0 921 51.7
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 2.2e-251 872.8 921 51.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.9e-250 869.8 924 52.8
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.4e-250 868.2 915 51.4
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 3.5e-249 865.5 913 50.7
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.5e-247 860.1 915 51.1
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 8.9e-245 850.9 926 50.3
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 2.6e-244 849.4 922 50.4
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 2.0e-236 823.2 909 48.6
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.8e-235 818.9 924 50.4
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 6.4e-235 818.1 911 49.0
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.3e-232 810.4 909 48.3
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 4.7e-230 802.0 902 49.8
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.8e-227 792.3 913 47.3
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 8.4e-227 791.2 910 49.9
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.6e-225 786.9 922 48.2
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 2.1e-225 786.6 913 47.4
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 6.0e-217 758.4 891 47.0
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 6.0e-217 758.4 904 49.3
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 1.3e-214 750.7 906 47.5
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.2e-214 748.4 722 53.3
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.7e-201 706.4 900 44.9
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.0e-200 704.5 924 44.4
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 8.7e-200 701.4 950 44.0
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 5.7e-199 698.7 832 46.9
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 6.5e-195 685.3 907 43.9
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 7.2e-194 681.8 891 43.9
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 6.5e-187 658.7 774 46.6
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 2.5e-186 656.8 916 42.5
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 5.5e-186 655.6 808 45.9
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.8e-182 643.3 911 41.5
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 9.1e-181 638.3 890 44.4
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.7e-179 634.0 873 42.0
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 9.4e-178 628.2 913 42.1
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.8e-176 624.0 924 40.5
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 5.2e-176 622.5 915 40.2
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 8.2e-174 615.1 915 39.8
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 1.2e-169 601.3 908 39.1
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.8e-168 597.4 909 38.5
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 4.0e-168 596.3 917 39.8
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.4e-167 592.8 741 46.8
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.4e-167 592.8 918 41.3
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.7e-163 580.9 910 38.2
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.8e-163 579.7 929 38.0
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 8.5e-163 578.6 955 38.4
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.4e-157 561.2 925 38.9
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 7.7e-156 555.4 878 39.0
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.0e-155 552.7 914 38.2
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.2e-153 548.1 956 37.2
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 2.1e-153 547.4 917 37.6
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 2.3e-152 543.9 892 37.6
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.4e-149 534.6 885 38.2
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.8e-149 534.3 941 37.1
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 5.4e-149 532.7 937 37.4
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.2e-148 531.6 892 37.6
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.5e-148 530.0 902 35.9
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 3.6e-145 520.0 937 36.7
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 8.0e-145 518.8 941 38.5
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.8e-144 517.7 889 37.5
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.8e-144 517.7 933 37.1
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 2.2e-142 510.8 893 36.8
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 4.9e-142 509.6 917 37.5
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 7.0e-141 505.8 880 36.7
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 3.5e-140 503.4 879 36.9
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 4.6e-140 503.1 921 36.4
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 3.0e-139 500.4 880 36.5
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 7.3e-138 495.7 956 36.1
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 5.2e-136 489.6 882 36.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.1e-132 477.6 901 37.3
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.6e-129 468.0 656 41.6
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 6.2e-129 466.1 763 37.1
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 9.9e-127 458.8 825 36.6
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 6.4e-126 456.1 827 37.4
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 8.9e-120 435.6 913 33.5
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-112 412.1 871 35.5
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.7e-110 404.8 893 31.9
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 5.6e-106 389.8 906 32.6
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.1e-104 385.6 401 50.6
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 8.4e-102 375.9 573 39.6
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.5e-98 365.2 534 41.6
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 1.9e-98 364.8 669 36.2
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 9.6e-98 362.5 422 47.9
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-96 359.0 967 31.6
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.8e-96 358.2 941 31.6
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.0e-91 340.9 664 34.8
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.3e-83 314.7 950 28.6
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.8e-80 305.1 481 41.6
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.5e-74 285.4 944 28.0
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.2e-71 275.8 631 32.0
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.7e-70 271.9 939 27.7
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 6.5e-70 270.0 490 35.1
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 7.4e-66 256.5 517 33.1
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-64 252.3 782 30.1
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 1.4e-59 235.7 435 34.3
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 1.8e-59 235.3 201 61.2
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 7.5e-58 229.9 347 37.8
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.2e-53 214.5 438 35.8
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 6.1e-52 210.3 177 58.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.4e-48 197.2 612 30.6
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.0e-46 193.0 431 34.3
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 2.9e-46 191.4 290 40.7
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.1e-44 185.3 465 31.0
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.0e-43 183.0 295 41.4
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 7.5e-42 176.8 470 31.1
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 8.3e-41 173.3 114 71.9
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.8e-40 172.2 399 30.3
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.2e-39 169.5 399 29.8
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 7.3e-37 160.2 252 39.3
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.4e-35 156.0 328 33.2
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.5e-34 150.2 521 28.4
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 5.4e-32 144.1 163 51.5
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.2e-31 142.9 212 39.2
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 2.7e-31 141.7 302 30.8
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 2.7e-31 141.7 302 30.8
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 5.8e-26 124.0 618 24.1
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 9.2e-24 116.7 111 57.7
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 6.0e-23 114.0 376 26.3
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.6e-22 110.5 380 28.2
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.5e-21 109.4 609 25.0
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 9.5e-21 106.7 189 40.7
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 2.1e-20 105.5 139 45.3
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.3e-19 102.1 295 29.8
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 7.5e-18 97.1 404 25.7
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.9e-17 94.4 212 33.5
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 4.9e-17 94.4 572 22.4
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.1e-16 93.2 417 24.9
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 1.2e-10 73.2 141 36.2
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 5.8e-10 70.9 141 36.2
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.6e-07 62.8 114 37.7
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 7.8e-07 60.5 84 35.7
Sed0011179 Sechium edule HOM05D004345 ORTHO05D005192 2.3e-06 58.9 53 52.8


User provided reference genes

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