Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 8.6e-75 283.5 136 100.0
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 1.1e-53 213.4 139 76.3
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 1.1e-53 213.4 136 75.0
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 5.4e-53 211.1 137 74.5
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 7.8e-52 207.2 137 77.4
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 3.0e-51 205.3 136 75.7
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 8.7e-51 203.8 136 72.8
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 8.7e-51 203.8 136 72.8
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 8.7e-51 203.8 138 72.5
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 1.1e-50 203.4 136 71.3
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 2.8e-49 198.7 129 74.4
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 3.6e-49 198.4 134 70.9
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 3.6e-49 198.4 134 70.9
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 4.8e-49 198.0 169 62.1
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 7.1e-45 184.1 137 67.9
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.2e-44 183.3 143 66.4
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.7e-44 182.2 137 67.2
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 3.5e-44 181.8 137 65.0
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 7.9e-44 180.6 136 66.2
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 1.3e-43 179.9 139 65.5
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 3.9e-43 178.3 140 64.3
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.5e-42 176.4 143 62.2
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.5e-42 176.4 143 62.2
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 4.3e-42 174.9 137 66.4
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 7.4e-42 174.1 137 62.8
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 7.4e-42 174.1 138 64.5
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 9.6e-42 173.7 138 63.8
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 2.8e-41 172.2 138 61.6
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 3.7e-41 171.8 140 63.6
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 8.1e-41 170.6 138 62.3
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 1.1e-40 170.2 137 64.2
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 1.8e-40 169.5 136 64.0
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 2.4e-40 169.1 139 61.2
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 3.1e-40 168.7 139 61.2
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 3.1e-40 168.7 137 62.8
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 3.1e-40 168.7 138 61.6
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 4.0e-40 168.3 135 63.0
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 4.0e-40 168.3 138 65.2
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 4.0e-40 168.3 143 60.8
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 9.0e-40 167.2 132 62.9
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 1.2e-39 166.8 123 65.9
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 1.2e-39 166.8 111 71.2
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.2e-39 166.8 141 61.0
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 1.5e-39 166.4 138 60.9
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 1.5e-39 166.4 137 61.3
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 2.0e-39 166.0 141 63.1
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 2.0e-39 166.0 140 62.1
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 2.6e-39 165.6 111 70.3
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 2.6e-39 165.6 138 61.6
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 2.6e-39 165.6 122 68.0
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 3.4e-39 165.2 141 61.7
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 4.5e-39 164.9 137 59.1
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 4.5e-39 164.9 143 59.4
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 4.9e-38 161.4 110 66.4
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 8.4e-38 160.6 111 67.6
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 1.9e-37 159.5 102 72.5
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.9e-37 159.5 116 67.2
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 1.9e-37 159.5 148 54.1
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 2.4e-37 159.1 143 55.9
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 2.4e-37 159.1 143 55.9
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 2.4e-37 159.1 135 57.8
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 3.2e-37 158.7 138 60.9
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 4.2e-37 158.3 143 55.2
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 4.2e-37 158.3 110 68.2
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 5.5e-37 157.9 137 58.4
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 5.5e-37 157.9 110 65.5
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 5.5e-37 157.9 103 70.9
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 7.1e-37 157.5 103 68.9
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 9.3e-37 157.1 110 65.5
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 9.3e-37 157.1 110 65.5
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 9.3e-37 157.1 146 54.8
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 1.2e-36 156.8 144 55.6
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 1.2e-36 156.8 111 64.0
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 1.2e-36 156.8 144 55.6
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 1.2e-36 156.8 139 59.7
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 1.6e-36 156.4 140 57.1
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 2.1e-36 156.0 97 75.3
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 2.7e-36 155.6 137 59.9
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 2.7e-36 155.6 103 68.0
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 2.7e-36 155.6 103 68.0
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 3.5e-36 155.2 139 56.1
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 4.6e-36 154.8 139 59.0
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 6.0e-36 154.5 137 56.2
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.0e-35 153.7 136 58.1
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 1.3e-35 153.3 122 59.8
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 2.3e-35 152.5 104 70.2
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 2.3e-35 152.5 99 67.7
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 3.0e-35 152.1 99 71.7
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 3.9e-35 151.8 136 57.4
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 5.1e-35 151.4 141 56.7
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 6.7e-35 151.0 137 57.7
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 6.7e-35 151.0 96 70.8
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 1.1e-34 150.2 90 72.2
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 1.5e-34 149.8 99 70.7
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 1.5e-34 149.8 138 57.2
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 1.9e-34 149.4 140 57.1
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 2.5e-34 149.1 140 55.0
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 2.5e-34 149.1 131 57.3
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 4.3e-34 148.3 102 68.6
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 5.6e-34 147.9 102 69.6
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 7.4e-34 147.5 102 69.6
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 3.7e-33 145.2 136 55.9
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 1.4e-32 143.3 99 67.7
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 6.9e-32 141.0 133 52.6
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 6.9e-32 141.0 137 54.0
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 9.0e-32 140.6 101 67.3
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 9.0e-32 140.6 101 67.3
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.2e-31 140.2 111 59.5
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 2.2e-30 136.0 121 54.5
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.4e-29 133.3 129 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 1.2e-28 130.2 103 61.2
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.5e-28 128.6 99 58.6
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 8.7e-27 124.0 76 76.3
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 1.3e-25 120.2 129 47.3
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 2.2e-25 119.4 76 71.1
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 3.7e-25 118.6 111 52.3
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 3.1e-24 115.5 108 50.0
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 5.0e-22 108.2 97 50.5
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 8.5e-22 107.5 88 50.0
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 3.9e-19 98.6 124 41.9
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 1.1e-18 97.1 58 69.0
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 7.4e-18 94.4 96 45.8
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.2e-15 87.0 74 58.1
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 9.4e-13 77.4 58 62.1
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 2.1e-12 76.3 76 56.6
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 4.5e-07 58.5 54 53.7


User provided reference genes

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