Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 6.4e-154 547.7 358 100.0
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 7.4e-118 427.9 363 83.7
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 2.9e-114 416.0 374 80.2
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 9.7e-110 401.0 390 76.4
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 2.1e-104 383.3 350 80.9
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 6.1e-104 381.7 349 65.9
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 8.8e-103 377.9 346 58.4
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 1.2e-102 377.5 358 78.8
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 5.7e-102 375.2 343 71.4
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 7.5e-102 374.8 342 79.8
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 1.3e-101 374.0 349 66.5
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 1.3e-101 374.0 352 77.6
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 4.8e-101 372.1 352 77.8
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 8.3e-101 371.3 362 77.6
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 8.3e-101 371.3 349 69.1
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 1.4e-100 370.5 356 67.1
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 9.1e-100 367.9 346 77.5
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 4.5e-99 365.5 349 75.9
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 5.9e-99 365.2 344 78.5
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.0e-98 364.4 346 76.9
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.7e-98 363.6 346 76.9
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.3e-98 363.2 349 75.6
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 2.9e-98 362.8 359 69.9
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 3.3e-97 359.4 349 75.4
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 2.8e-96 356.3 349 69.1
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 3.6e-96 355.9 344 77.0
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 8.0e-96 354.8 346 75.1
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 8.0e-96 354.8 359 74.1
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 5.2e-95 352.1 349 68.8
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.2e-94 350.9 343 75.2
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 1.5e-94 350.5 333 78.1
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.4e-94 349.0 352 74.7
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 9.8e-94 347.8 373 64.6
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 2.2e-93 346.7 336 72.3
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 4.9e-93 345.5 350 74.0
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 8.3e-93 344.7 348 75.0
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 2.4e-92 343.2 347 73.5
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 1.1e-89 334.3 343 73.5
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 1.1e-89 334.3 342 65.5
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 2.5e-89 333.2 343 72.9
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 1.8e-87 327.0 349 65.3
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 4.0e-87 325.9 411 46.2
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 1.5e-86 323.9 357 70.6
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.4e-86 322.8 347 71.5
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 1.1e-84 317.8 325 53.8
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 1.8e-84 317.0 359 63.0
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 1.2e-83 314.3 358 68.7
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 2.0e-83 313.5 343 71.1
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 4.6e-83 312.4 356 70.5
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 6.0e-83 312.0 356 60.4
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 3.9e-82 309.3 350 70.0
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 3.3e-81 306.2 350 62.0
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 3.3e-81 306.2 343 69.7
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 2.3e-79 300.1 350 68.0
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 6.8e-79 298.5 349 69.6
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 4.4e-78 295.8 350 68.3
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 2.9e-77 293.1 299 70.2
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 2.9e-77 293.1 378 47.1
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 2.9e-77 293.1 378 47.1
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 3.7e-77 292.7 350 67.7
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 6.4e-77 292.0 346 65.0
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 8.3e-77 291.6 352 67.0
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.1e-76 291.2 277 70.4
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 9.2e-76 288.1 350 57.4
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 3.0e-74 283.1 336 48.8
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 6.6e-74 282.0 382 45.5
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 1.1e-73 281.2 342 67.8
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 9.5e-73 278.1 328 62.8
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 1.2e-72 277.7 349 61.9
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.1e-71 274.6 327 58.7
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 1.2e-70 271.2 349 64.5
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 2.6e-70 270.0 344 59.9
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 9.9e-70 268.1 321 69.5
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 1.1e-68 264.6 354 64.7
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 4.1e-68 262.7 344 65.1
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 9.2e-68 261.5 344 65.1
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 1.0e-66 258.1 349 65.6
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.7e-66 257.3 291 73.9
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 1.7e-66 257.3 300 73.0
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 2.3e-66 256.9 291 73.9
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 2.3e-66 256.9 344 65.1
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.0e-66 256.5 346 64.2
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.0e-66 256.5 346 64.2
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 4.3e-65 252.7 347 50.4
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 1.2e-64 251.1 300 63.3
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 3.6e-64 249.6 346 62.4
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 8.1e-64 248.4 359 63.8
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 5.2e-63 245.7 288 69.1
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 1.1e-60 238.0 293 70.3
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 3.2e-60 236.5 288 71.5
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 9.6e-57 224.9 340 40.6
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 3.6e-56 223.0 288 59.7
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 3.6e-56 223.0 290 70.3
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 1.2e-54 218.0 277 70.4
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 1.3e-53 214.5 277 69.3
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 3.6e-48 196.4 276 49.6
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 1.2e-46 191.4 341 53.1
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 1.4e-44 184.5 396 52.5
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.9e-44 184.1 352 50.0
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 4.6e-43 179.5 258 67.8
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 2.3e-42 177.2 121 68.6
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 5.1e-42 176.0 410 32.2
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.1e-39 168.3 140 61.4
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 4.0e-39 166.4 155 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 2.0e-38 164.1 349 50.4
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 1.6e-32 144.4 107 69.2
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 1.6e-32 144.4 107 69.2
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 5.3e-31 139.4 286 41.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 6.9e-31 139.0 127 57.5
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 6.7e-26 122.5 88 65.9
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 6.7e-26 122.5 131 50.4
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.1e-25 121.7 225 34.7
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 1.8e-23 114.4 271 29.2
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 5.3e-07 59.7 82 42.7
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 5.9e-06 56.2 95 40.0
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 7.7e-06 55.8 138 30.4
TWI75G1235 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 7.7e-06 55.8 273 23.8


User provided reference genes

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