Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0005383 Lotus japonicus HOM05D002502 ORTHO05D017711 3.2e-82 308.5 172 100.0
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 9.9e-44 180.6 214 59.8
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 2.9e-43 179.1 214 59.8
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 2.1e-41 172.9 215 58.6
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 1.3e-40 170.2 215 57.7
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 6.9e-37 157.9 217 54.8
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 9.0e-37 157.5 215 54.4
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 1.2e-36 157.1 217 54.8
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 1.0e-35 154.1 217 53.0
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 1.3e-35 153.7 213 53.1
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 8.4e-35 151.0 213 54.0
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 1.4e-34 150.2 213 53.1
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 7.9e-33 144.4 210 51.0
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 3.9e-32 142.1 210 51.4
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 1.5e-31 140.2 216 51.4
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 4.3e-31 138.7 205 52.2
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 9.7e-31 137.5 216 51.4
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 4.8e-30 135.2 214 50.0
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 6.3e-30 134.8 211 49.8
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 8.2e-30 134.4 213 47.9
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 1.4e-29 133.7 215 49.8
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 3.1e-29 132.5 216 47.7
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 3.1e-29 132.5 216 49.1
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 3.1e-29 132.5 212 50.5
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 4.1e-29 132.1 211 48.8
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 5.3e-29 131.7 218 49.1
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 6.9e-29 131.3 216 49.5
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.2e-28 130.6 216 47.2
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 1.2e-28 130.6 208 49.0
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 1.5e-28 130.2 199 51.3
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 1.5e-28 130.2 215 47.9
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 2.0e-28 129.8 207 48.3
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 2.6e-28 129.4 212 48.1
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 3.4e-28 129.0 210 47.6
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 4.5e-28 128.6 216 48.1
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 1.3e-27 127.1 213 47.9
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 1.3e-27 127.1 204 49.0
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 1.7e-27 126.7 215 47.0
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 2.2e-27 126.3 212 46.7
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 2.2e-27 126.3 212 48.6
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 2.9e-27 125.9 218 44.5
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 2.9e-27 125.9 215 48.4
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 3.8e-27 125.6 209 49.3
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 5.0e-27 125.2 212 46.7
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 6.5e-27 124.8 210 48.6
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 6.5e-27 124.8 208 50.0
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 8.5e-27 124.4 211 44.1
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 1.1e-26 124.0 210 48.6
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 1.1e-26 124.0 215 46.5
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 1.1e-26 124.0 208 48.1
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 1.1e-26 124.0 212 46.2
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 1.4e-26 123.6 215 48.8
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 1.9e-26 123.2 209 47.4
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.9e-26 123.2 209 47.4
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.9e-26 123.2 190 49.5
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 1.9e-26 123.2 214 48.1
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 2.5e-26 122.9 207 48.3
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 2.5e-26 122.9 210 48.1
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 2.5e-26 122.9 217 47.0
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 2.5e-26 122.9 213 46.5
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 7.2e-26 121.3 195 48.2
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 7.2e-26 121.3 195 48.2
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 4.6e-25 118.6 176 52.8
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 6.1e-25 118.2 202 46.0
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 1.0e-24 117.5 187 48.7
Ca_01773_v3 Cicer arietinum L. HOM05D002502 ORTHO05D017711 1.8e-24 116.7 171 51.5
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 2.3e-24 116.3 204 47.1
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 3.0e-24 115.9 221 43.4
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 3.9e-24 115.5 213 46.0
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 3.9e-24 115.5 213 46.0
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.9e-24 115.5 223 42.6
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 6.7e-24 114.8 210 46.7
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 6.7e-24 114.8 214 45.8
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 6.7e-24 114.8 213 44.1
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 8.7e-24 114.4 196 45.9
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 8.7e-24 114.4 209 45.9
TPR.G36771 Trifolium pratense HOM05D002502 ORTHO05D017711 8.7e-24 114.4 161 54.0
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 1.1e-23 114.0 213 45.1
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.5e-23 113.6 214 43.0
Medtr2g082240 Medicago truncatula HOM05D002502 ORTHO05D017711 1.9e-23 113.2 155 52.9
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.5e-23 112.8 205 44.4
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 3.3e-23 112.5 213 46.0
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 3.3e-23 112.5 215 46.5
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 4.3e-23 112.1 207 44.9
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 5.7e-23 111.7 206 44.7
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 9.7e-23 110.9 214 43.9
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 9.7e-23 110.9 217 44.7
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.3e-22 110.5 162 48.1
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 1.3e-22 110.5 207 45.4
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 1.7e-22 110.2 214 43.9
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 1.7e-22 110.2 207 44.9
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 2.8e-22 109.4 209 46.9
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 2.8e-22 109.4 219 42.0
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 3.7e-22 109.0 190 44.7
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 3.7e-22 109.0 212 44.3
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 3.7e-22 109.0 212 44.3
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 3.7e-22 109.0 214 44.4
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 4.8e-22 108.6 206 45.6
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 4.8e-22 108.6 207 44.4
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 4.8e-22 108.6 207 44.4
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 6.3e-22 108.2 209 45.0
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 1.1e-21 107.5 225 42.7
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 1.4e-21 107.1 224 41.5
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 1.4e-21 107.1 208 44.2
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 1.4e-21 107.1 219 40.6
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 1.4e-21 107.1 220 43.6
TAR365G0446 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.4e-21 107.1 170 47.6
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 1.8e-21 106.7 219 40.6
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 1.8e-21 106.7 145 57.2
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 2.4e-21 106.3 222 41.9
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 2.4e-21 106.3 220 43.2
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 3.1e-21 105.9 222 41.9
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 3.1e-21 105.9 206 44.2
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 5.3e-21 105.1 212 42.5
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 6.9e-21 104.8 209 44.5
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 6.9e-21 104.8 210 44.8
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 1.2e-20 104.0 203 43.3
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.2e-20 104.0 207 44.9
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 1.5e-20 103.6 217 41.5
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 2.0e-20 103.2 150 51.3
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 2.6e-20 102.8 181 47.5
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 4.5e-20 102.1 220 40.0
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 5.9e-20 101.7 212 42.5
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 7.7e-20 101.3 204 40.2
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 7.7e-20 101.3 219 40.6
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 7.7e-20 101.3 212 40.6
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.7e-19 100.1 205 42.4
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 2.9e-19 99.4 212 40.6
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 3.8e-19 99.0 209 38.8
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 3.8e-19 99.0 208 41.8
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 3.8e-19 99.0 212 39.2
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 6.5e-19 98.2 209 40.7
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 8.5e-19 97.8 214 43.0
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 1.1e-18 97.4 69 72.5
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 1.4e-18 97.1 106 56.6
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.5e-18 96.3 206 42.7
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 2.5e-18 96.3 122 54.1
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 3.2e-18 95.9 209 42.1
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 4.2e-18 95.5 212 39.2
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 5.5e-18 95.1 208 39.9
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 7.2e-18 94.7 216 37.0
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 7.2e-18 94.7 202 40.6
PGSC0003DMG400030186 Solanum tuberosum HOM05D002502 ORTHO05D017711 9.4e-18 94.4 70 74.3
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 1.2e-17 94.0 218 38.1
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 1.6e-17 93.6 120 53.3
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 1.6e-17 93.6 214 37.9
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 1.6e-17 93.6 63 77.8
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 1.6e-17 93.6 213 40.8
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 2.1e-17 93.2 214 37.9
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 2.1e-17 93.2 63 76.2
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 2.1e-17 93.2 219 39.7
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 2.7e-17 92.8 213 39.9
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 2.7e-17 92.8 214 37.9
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 3.6e-17 92.4 214 37.9
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 4.7e-17 92.0 208 38.5
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 1.0e-16 90.9 213 39.4
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 1.0e-16 90.9 195 41.5
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 1.8e-16 90.1 208 37.0
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.8e-16 90.1 201 40.8
RcHm_v2.0_Chr5g0051921 Rosa chinensis HOM05D002502 ORTHO05D003592 1.8e-16 90.1 210 38.6
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 2.3e-16 89.7 209 36.8
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 3.0e-16 89.4 208 37.0
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 3.0e-16 89.4 208 37.0
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 3.0e-16 89.4 208 37.0
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 3.0e-16 89.4 212 40.6
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 3.0e-16 89.4 57 78.9
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 3.9e-16 89.0 216 42.1
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 3.9e-16 89.0 204 37.7
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 5.1e-16 88.6 115 52.2
BraA06t23215Z Brassica rapa HOM05D002502 ORTHO05D017711 6.7e-16 88.2 93 55.9
CARHR010410 Cardamine hirsuta HOM05D002502 ORTHO05D003592 5.7e-15 85.1 207 39.6
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 7.4e-15 84.7 213 36.2
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 9.7e-15 84.3 219 37.0
Oeu028550.1 Olea europaea HOM05D002502 ORTHO05D003592 9.7e-15 84.3 58 74.1
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 3.7e-14 82.4 213 35.7
GSVIVG01034588001 Vitis vinifera HOM05D002502 ORTHO05D003592 7.7e-12 74.7 174 41.4
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 2.5e-10 69.7 179 38.0
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.2e-10 68.9 199 36.2
MCO16G373 Micromonas commoda HOM05D002502 ORTHO05D003592 7.2e-10 68.2 67 56.7
A06p00830 Brassica napus HOM05D001067 ORTHO05D000876 1.2e-09 67.4 58 60.3
BraSC277t45949Z Brassica rapa HOM05D001067 ORTHO05D000876 1.2e-09 67.4 58 60.3
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 2.1e-09 66.6 129 41.1
Cpa.g.c44337.1 Carica papaya HOM05D002502 ORTHO05D017711 2.7e-09 66.2 39 87.2
HPP92_002934 Vanilla planifolia HOM05D002502 ORTHO05D017711 8.0e-09 64.7 70 55.7
FAN09G2849 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.0e-07 60.1 140 40.7
Cre10.g459500 Chlamydomonas reinhardtii HOM05D002502 ORTHO05D003592 3.7e-06 55.8 59 47.5


User provided reference genes

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