Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 1.7e-114 416.0 207 100.0
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 2.8e-48 196.1 219 52.5
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.4e-36 156.4 216 46.3
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.4e-36 156.4 222 45.0
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.1e-36 155.6 216 45.8
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 3.0e-34 149.4 168 50.0
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 1.1e-31 141.0 190 46.8
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 9.8e-30 134.4 221 38.9
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 5.4e-28 128.6 200 41.0
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 4.3e-25 119.0 182 41.8
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.8e-24 116.3 201 39.3
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 6.2e-24 115.2 140 50.0
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.5e-22 110.5 218 34.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 4.1e-20 102.4 177 41.2
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 1.6e-19 100.5 188 36.7
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 2.1e-19 100.1 188 36.7
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 3.5e-19 99.4 168 39.9
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 6.0e-19 98.6 210 36.2
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.3e-18 97.4 212 34.9
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 1.1e-17 94.4 217 34.6
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.1e-17 94.4 212 35.4
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 1.9e-17 93.6 168 40.5
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.3e-17 92.4 212 36.8
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 2.1e-16 90.1 206 35.9
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 2.8e-16 89.7 149 40.3
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 1.1e-15 87.8 162 39.5
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 1.8e-15 87.0 169 36.7
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 3.1e-15 86.3 191 37.7
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.0e-15 85.9 208 34.1
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 4.0e-15 85.9 208 34.1
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 4.0e-15 85.9 190 37.9
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 6.8e-15 85.1 187 33.2
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 2.6e-14 83.2 193 36.8
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 2.6e-14 83.2 163 34.4
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 2.6e-14 83.2 178 35.4
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 3.4e-14 82.8 209 33.0
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.2e-13 80.1 178 33.7
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.2e-13 80.1 175 34.3
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 2.9e-13 79.7 163 33.7
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 6.4e-13 78.6 260 30.4
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.4e-13 78.6 178 35.4
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 8.4e-13 78.2 161 35.4
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 8.4e-13 78.2 170 35.3
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 1.1e-12 77.8 176 34.7
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.1e-12 77.8 172 35.5
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 3.2e-12 76.3 178 33.7
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 4.2e-12 75.9 151 35.8
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 4.2e-12 75.9 150 35.3
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 5.4e-12 75.5 197 33.0
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 7.1e-12 75.1 158 34.8
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 9.2e-12 74.7 192 31.2
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 9.2e-12 74.7 172 34.3
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 9.2e-12 74.7 177 34.5
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 1.6e-11 73.9 156 35.3
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 2.1e-11 73.6 159 37.1
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 2.7e-11 73.2 149 32.9
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 2.7e-11 73.2 126 32.5
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.5e-11 72.8 173 32.4
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 3.5e-11 72.8 160 34.4
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 4.6e-11 72.4 170 31.8
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.0e-10 71.2 176 31.2
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 1.0e-10 71.2 164 36.6
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 1.3e-10 70.9 158 33.5
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.7e-10 70.5 179 31.3
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 2.3e-10 70.1 157 34.4
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 2.3e-10 70.1 157 34.4
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 3.9e-10 69.3 159 33.3
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.9e-10 69.3 155 34.8
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.9e-10 69.3 160 35.0
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 5.1e-10 68.9 128 35.2
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 5.1e-10 68.9 161 34.2
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 5.1e-10 68.9 160 32.5
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.1e-09 67.8 150 31.3
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 1.1e-09 67.8 140 32.1
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.1e-09 67.8 129 35.7
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 1.5e-09 67.4 148 33.1
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.5e-09 67.4 160 34.4
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.5e-09 67.4 173 32.9
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 2.5e-09 66.6 136 33.1
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 2.5e-09 66.6 162 30.9
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 2.5e-09 66.6 154 33.1
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 2.5e-09 66.6 144 34.7
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 3.3e-09 66.2 144 32.6
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.3e-09 65.1 166 33.7
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 7.3e-09 65.1 146 34.2
PGSC0003DMG400006224 Solanum tuberosum HOM05D011234 ORTHO05D003195 9.6e-09 64.7 176 34.7
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 1.2e-08 64.3 146 32.2
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 1.2e-08 64.3 144 31.9
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 1.2e-08 64.3 144 31.9
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 1.2e-08 64.3 147 33.3
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 1.2e-08 64.3 144 31.9
Ca_18691_v3 Cicer arietinum L. HOM05D003792 ORTHO05D003195 1.6e-08 63.9 153 34.0
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 1.6e-08 63.9 164 29.9
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 2.8e-08 63.2 141 32.6
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 4.7e-08 62.4 143 31.5
FAN20G1193 Fragaria x ananassa HOM05D025254 ORTHO05D003195 6.2e-08 62.0 193 32.6
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 6.2e-08 62.0 189 27.5
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 6.2e-08 62.0 159 32.1
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 8.1e-08 61.6 169 34.3
RcHm_v2.0_Chr6g0257491 Rosa chinensis HOM05D025254 ORTHO05D003195 8.1e-08 61.6 165 35.2
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 8.1e-08 61.6 148 31.1
Solyc10g050220.2 Solanum lycopersicum HOM05D011234 ORTHO05D003195 1.1e-07 61.2 177 33.9
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 2.4e-07 60.1 141 31.2
Sopen10g021380 Solanum pennellii HOM05D011234 ORTHO05D003195 2.4e-07 60.1 177 33.3
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 4.0e-07 59.3 193 32.6
FAN27G2730 Fragaria x ananassa HOM05D025254 ORTHO05D003195 4.0e-07 59.3 193 32.1
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 5.3e-07 58.9 213 28.2
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 5.3e-07 58.9 153 33.3
Psat7g125520 Pisum sativum HOM05D003792 ORTHO05D003195 6.9e-07 58.5 135 36.3
Phvul.003G291900 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 9.0e-07 58.2 142 33.8
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.2e-06 57.8 148 33.1
VMungo0251G0642 Vigna mungo HOM05D003792 ORTHO05D003195 1.2e-06 57.8 132 36.4
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 1.5e-06 57.4 132 32.6
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.0e-06 57.0 144 32.6
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.0e-06 57.0 150 31.3
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.0e-06 57.0 150 31.3
FAN15G2062 Fragaria x ananassa HOM05D025254 ORTHO05D003195 2.6e-06 56.6 193 31.1
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.6e-06 56.6 143 34.3
Rhsim02G0124700 Rhododendron simsii HOM05D003792 ORTHO05D003195 3.4e-06 56.2 143 30.8
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 4.4e-06 55.8 154 29.2
Carub.0007s0642 Capsella rubella HOM05D009953 ORTHO05D003195 4.4e-06 55.8 132 35.6
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 4.4e-06 55.8 143 36.4
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 4.4e-06 55.8 93 36.6
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 4.4e-06 55.8 109 33.0
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 4.4e-06 55.8 142 31.0
Migut.B00353 Erythranthe guttata HOM05D011234 ORTHO05D003195 4.4e-06 55.8 162 32.1
Rhsim02G0123800 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.4e-06 55.8 81 40.7
vmacro02044 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 4.4e-06 55.8 43 69.8
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 5.8e-06 55.5 144 33.3
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.8e-06 55.5 144 31.9
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 5.8e-06 55.5 67 40.3
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.6e-06 55.1 137 28.5
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 9.9e-06 54.7 142 29.6
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.9e-06 54.7 129 29.5
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 9.9e-06 54.7 124 29.8
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 9.9e-06 54.7 147 29.9


User provided reference genes

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