Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C132T1 Lonicera japonica HOM05D000025 ORTHO05D000040 2.2e-27 124.8 59 100.0
Lj5C399T4 Lonicera japonica HOM05D000025 ORTHO05D000040 1.7e-14 82.0 55 78.2
Lj5A401G21 Lonicera japonica HOM05D000025 ORTHO05D000040 2.8e-14 81.3 61 73.8
Lj5C132T3 Lonicera japonica HOM05D000025 ORTHO05D000040 2.8e-14 81.3 55 76.4
Lj5P400T8 Lonicera japonica HOM05D000025 ORTHO05D000040 4.8e-14 80.5 55 76.4
Lj5C409T0 Lonicera japonica HOM05D000025 ORTHO05D000040 6.3e-14 80.1 55 76.4
Lj5P399T26 Lonicera japonica HOM05D000025 ORTHO05D000040 6.3e-14 80.1 55 76.4
Lj5C408T0 Lonicera japonica HOM05D000025 ORTHO05D000040 1.4e-13 79.0 55 74.5
Lj5C409T1 Lonicera japonica HOM05D000025 ORTHO05D000040 2.4e-13 78.2 55 74.5
Lj5P402T4 Lonicera japonica HOM05D000025 ORTHO05D000040 2.4e-13 78.2 56 71.4
Lj5C132T2 Lonicera japonica HOM05D000025 ORTHO05D000040 1.1e-10 69.3 53 69.8
Lj2P841T13 Lonicera japonica HOM05D000025 ORTHO05D000040 3.2e-10 67.8 55 67.3
Lalb_Chr07g0183061 Lupinus albus HOM05D000025 ORTHO05D000040 3.2e-10 67.8 44 68.2
Lj1C798G1 Lonicera japonica HOM05D000025 ORTHO05D000040 7.2e-10 66.6 41 78.0
Haze_07610 Corylus avellana HOM05D000025 ORTHO05D000040 4.7e-09 63.9 45 73.3
Nitab4.5_0000025g0260 Nicotiana tabacum HOM05D000025 ORTHO05D000040 4.7e-09 63.9 42 71.4
Nitab4.5_0001377g0040 Nicotiana tabacum HOM05D000025 ORTHO05D000040 4.7e-09 63.9 42 71.4
Sopen03g031130 Solanum pennellii HOM05D000025 ORTHO05D000040 7.9e-09 63.2 42 71.4
PGSC0003DMG400018131 Solanum tuberosum HOM05D000025 ORTHO05D000040 7.9e-09 63.2 42 71.4
arahy.Tifrunner.gnm1.ann1.G691ZN Arachis hypogaea HOM05D000025 ORTHO05D000040 1.0e-08 62.8 44 59.1
arahy.Tifrunner.gnm1.ann1.JEM7HP Arachis hypogaea HOM05D000025 ORTHO05D000040 1.0e-08 62.8 44 59.1
Haze_07613 Corylus avellana HOM05D000025 ORTHO05D000040 1.0e-08 62.8 45 73.3
AUR62022102 Chenopodium quinoa HOM05D000025 ORTHO05D021209 1.4e-08 62.4 58 56.9
Lj4g0010003 Lotus japonicus HOM05D000025 ORTHO05D000040 1.4e-08 62.4 50 62.0
QL10p006320 Quercus lobata HOM05D000025 ORTHO05D000040 1.4e-08 62.4 45 71.1
CSS0004837 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 1.8e-08 62.0 42 73.8
Solyc03g112030.3 Solanum lycopersicum HOM05D000025 ORTHO05D000040 1.8e-08 62.0 42 69.0
CAN.G126.56 Capsicum annuum HOM05D000025 ORTHO05D000040 2.3e-08 61.6 42 69.0
CAN.G126.63 Capsicum annuum HOM05D000025 ORTHO05D000040 2.3e-08 61.6 42 69.0
CAN.G126.75 Capsicum annuum HOM05D000025 ORTHO05D000040 2.3e-08 61.6 42 69.0
CAN.G3121.1 Capsicum annuum HOM05D000025 ORTHO05D000040 2.3e-08 61.6 42 69.0
Cfa019257 Carpinus fangiana HOM05D000025 ORTHO05D000040 2.3e-08 61.6 42 76.2
Atru.chr9.2620 Acer truncatum HOM05D000025 ORTHO05D000040 3.0e-08 61.2 53 60.4
CANSAT80G0524 Cannabis sativa HOM05D000025 ORTHO05D000040 3.0e-08 61.2 42 73.8
Dinv20578 Davidia involucrata HOM05D000025 ORTHO05D000040 3.0e-08 61.2 42 71.4
Manes.14G059400 Manihot esculenta HOM05D000025 ORTHO05D000040 3.0e-08 61.2 54 59.3
Peaxi162Scf00801g00061 Petunia axillaris HOM05D000025 ORTHO05D000040 3.0e-08 61.2 42 66.7
CSS0015933 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 3.9e-08 60.8 42 71.4
Haze_07608 Corylus avellana HOM05D000025 ORTHO05D000040 3.9e-08 60.8 42 73.8
Hma1.2p1_0989F.1_g244710 Hydrangea macrophylla HOM05D000025 ORTHO05D000040 3.9e-08 60.8 59 59.3
Eucgr.B00199 Eucalyptus grandis HOM05D000025 ORTHO05D000040 5.1e-08 60.5 43 69.8
Eucgr.B00204 Eucalyptus grandis HOM05D000025 ORTHO05D000040 5.1e-08 60.5 43 69.8
Eucgr.B01015 Eucalyptus grandis HOM05D000025 ORTHO05D000040 5.1e-08 60.5 43 69.8
Hma1.2p1_1092F.1_g255910 Hydrangea macrophylla HOM05D000025 ORTHO05D000040 5.1e-08 60.5 59 59.3
Medtr4g104540 Medicago truncatula HOM05D000025 ORTHO05D000040 5.1e-08 60.5 44 59.1
QL10p006337 Quercus lobata HOM05D000025 ORTHO05D000040 5.1e-08 60.5 40 77.5
GSVIVG01007610001 Vitis vinifera HOM05D000025 ORTHO05D000040 6.7e-08 60.1 42 69.0
Ah.08g218500 Amaranthus hybridus HOM05D000025 ORTHO05D000040 8.8e-08 59.7 42 66.7
CSS0049143 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 8.8e-08 59.7 44 72.7
Cfa019255 Carpinus fangiana HOM05D000025 ORTHO05D000040 8.8e-08 59.7 42 71.4
Ca_19426_v3 Cicer arietinum L. HOM05D000025 ORTHO05D000040 8.8e-08 59.7 44 59.1
Ca_30680_v3 Cicer arietinum L. HOM05D000025 ORTHO05D000040 8.8e-08 59.7 44 59.1
Hma1.2p1_0989F.1_g244720 Hydrangea macrophylla HOM05D000025 ORTHO05D000040 8.8e-08 59.7 59 57.6
Medtr4g104610 Medicago truncatula HOM05D000025 ORTHO05D000040 8.8e-08 59.7 44 59.1
CAN.G126.69 Capsicum annuum HOM05D000025 ORTHO05D000040 1.1e-07 59.3 40 70.0
Sopen03g031140 Solanum pennellii HOM05D000025 ORTHO05D000040 1.1e-07 59.3 42 64.3
GSVIVG01007618001 Vitis vinifera HOM05D000025 ORTHO05D000040 1.1e-07 59.3 42 66.7
Dinv11137 Davidia involucrata HOM05D000025 ORTHO05D000040 1.5e-07 58.9 56 60.7
Dinv11139 Davidia involucrata HOM05D000025 ORTHO05D000040 1.5e-07 58.9 57 59.6
Eucgr.L00981 Eucalyptus grandis HOM05D000025 ORTHO05D000040 1.5e-07 58.9 43 67.4
Dinv11138 Davidia involucrata HOM05D000025 ORTHO05D000040 2.0e-07 58.5 43 67.4
FvH4_5g06573 Fragaria vesca HOM05D000025 ORTHO05D000040 2.0e-07 58.5 48 64.6
Haze_07615 Corylus avellana HOM05D000025 ORTHO05D000040 2.6e-07 58.2 38 76.3
Dinv20575 Davidia involucrata HOM05D000025 ORTHO05D000040 2.6e-07 58.2 56 60.7
Dinv38508 Davidia involucrata HOM05D000025 ORTHO05D000040 2.6e-07 58.2 40 70.0
Oeu050311.1 Olea europaea HOM05D000025 ORTHO05D000040 2.6e-07 58.2 42 69.0
QL10p006371 Quercus lobata HOM05D000025 ORTHO05D000040 2.6e-07 58.2 41 70.7
AUR62022101 Chenopodium quinoa HOM05D000025 ORTHO05D000040 3.3e-07 57.8 42 64.3
Cc04_g11270 Coffea canephora HOM05D000025 ORTHO05D000040 3.3e-07 57.8 53 58.5
MD11G1091500 Malus domestica HOM05D000025 ORTHO05D000040 3.3e-07 57.8 40 75.0
Psat4g061160 Pisum sativum HOM05D000025 ORTHO05D000040 3.3e-07 57.8 35 71.4
CANSAT80G2687 Cannabis sativa HOM05D000025 ORTHO05D000040 4.4e-07 57.4 42 69.0
CARHR157060 Cardamine hirsuta HOM05D000025 ORTHO05D000040 4.4e-07 57.4 61 55.7
Thecc.03G117100 Theobroma cacao HOM05D000025 ORTHO05D000040 4.4e-07 57.4 42 64.3
CSS0011090 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 5.7e-07 57.0 55 56.4
CSS0026669 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 5.7e-07 57.0 55 56.4
CSS0028343 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 5.7e-07 57.0 44 70.5
CSS0032768 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 5.7e-07 57.0 44 70.5
CSS0036137 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 5.7e-07 57.0 44 70.5
CiPaw.11G017400 Carya illinoinensis HOM05D000025 ORTHO05D000040 5.7e-07 57.0 57 57.9
Lj5C132T8 Lonicera japonica HOM05D000025 ORTHO05D000040 5.7e-07 57.0 42 64.3
MD06G1163300 Malus domestica HOM05D000025 ORTHO05D000040 5.7e-07 57.0 40 67.5
MD17G1259400 Malus domestica HOM05D000025 ORTHO05D000040 5.7e-07 57.0 45 62.2
Psat4g061080 Pisum sativum HOM05D000025 ORTHO05D000040 5.7e-07 57.0 38 65.8
Dinv38509 Davidia involucrata HOM05D000025 ORTHO05D000040 7.4e-07 56.6 42 64.3
Dinv38513 Davidia involucrata HOM05D000025 ORTHO05D000040 7.4e-07 56.6 42 64.3
Glyma.13G181900 Glycine max HOM05D000025 ORTHO05D000040 7.4e-07 56.6 40 62.5
Hma1.2p1_1092F.1_g255890 Hydrangea macrophylla HOM05D000025 ORTHO05D000040 7.4e-07 56.6 55 56.4
MD06G1164000 Malus domestica HOM05D000025 ORTHO05D000040 7.4e-07 56.6 45 62.2
MD14G1169000 Malus domestica HOM05D000025 ORTHO05D000040 7.4e-07 56.6 39 71.8
Prupe.5G163500 Prunus persica HOM05D000025 ORTHO05D000040 7.4e-07 56.6 55 52.7
Solyc03g112040.1 Solanum lycopersicum HOM05D000025 ORTHO05D000040 7.4e-07 56.6 43 65.1
CAN.G126.66 Capsicum annuum HOM05D000025 ORTHO05D000040 9.7e-07 56.2 40 67.5
FAN20G1694 Fragaria x ananassa HOM05D000025 ORTHO05D000040 9.7e-07 56.2 40 72.5
FAN27G0721 Fragaria x ananassa HOM05D000025 ORTHO05D000040 9.7e-07 56.2 40 72.5
MD06G1163100 Malus domestica HOM05D000025 ORTHO05D000040 9.7e-07 56.2 40 67.5
MD06G1224400 Malus domestica HOM05D000025 ORTHO05D000040 9.7e-07 56.2 40 67.5
Medtr4g104550 Medicago truncatula HOM05D000025 ORTHO05D000040 9.7e-07 56.2 40 65.0
PGR083G2201 Punica granatum HOM05D000025 ORTHO05D000040 9.7e-07 56.2 55 60.0
Sc04g0001450 Simmondsia chinensis HOM05D000025 ORTHO05D000040 9.7e-07 56.2 43 67.4
CSS0020861 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 1.3e-06 55.8 42 64.3
Dinv38510 Davidia involucrata HOM05D000025 ORTHO05D000040 1.3e-06 55.8 40 67.5
FvH4_2g12910 Fragaria vesca HOM05D000025 ORTHO05D000040 1.3e-06 55.8 40 70.0
FvH4_5g06576 Fragaria vesca HOM05D000025 ORTHO05D000040 1.3e-06 55.8 48 62.5
FAN08G2511 Fragaria x ananassa HOM05D000025 ORTHO05D000040 1.3e-06 55.8 48 62.5
FAN24G3111 Fragaria x ananassa HOM05D000025 ORTHO05D000040 1.3e-06 55.8 40 70.0
Hma1.2p1_0989F.1_g244730 Hydrangea macrophylla HOM05D000025 ORTHO05D000040 1.3e-06 55.8 55 56.4
Phvul.002G226700 Phaseolus vulgaris HOM05D000025 ORTHO05D000040 1.3e-06 55.8 55 52.7
TPR.G37536 Trifolium pratense HOM05D000025 ORTHO05D000040 1.3e-06 55.8 44 56.8
Actinidia36759 Actinidia chinensis HOM05D000025 ORTHO05D000040 1.7e-06 55.5 41 70.7
CANSAT80G0822 Cannabis sativa HOM05D000025 ORTHO05D000040 1.7e-06 55.5 42 69.0
AUR62001219 Chenopodium quinoa HOM05D000025 ORTHO05D000040 1.7e-06 55.5 58 51.7
Cc00_g33270 Coffea canephora HOM05D000025 ORTHO05D000040 1.7e-06 55.5 53 58.5
Dinv10279 Davidia involucrata HOM05D000025 ORTHO05D000040 1.7e-06 55.5 42 66.7
Dinv38511 Davidia involucrata HOM05D000025 ORTHO05D000040 1.7e-06 55.5 45 60.0
MD11G1091800 Malus domestica HOM05D000025 ORTHO05D000040 1.7e-06 55.5 45 66.7
PGR083G1836 Punica granatum HOM05D000025 ORTHO05D000040 1.7e-06 55.5 42 66.7
SalBow5G0587 Salvia bowleyana HOM05D000025 ORTHO05D000040 1.7e-06 55.5 59 54.2
CiPaw.11G017200 Carya illinoinensis HOM05D000025 ORTHO05D000040 2.2e-06 55.1 57 56.1
ClCG06G017460 Citrullus lanatus HOM05D000025 ORTHO05D000040 2.2e-06 55.1 42 59.5
Cc00_g09200 Coffea canephora HOM05D000025 ORTHO05D000040 2.2e-06 55.1 53 56.6
Duzib068G1225 Durio zibethinus HOM05D000025 ORTHO05D000040 2.2e-06 55.1 55 56.4
Lalb_Chr07g0183051 Lupinus albus HOM05D000025 ORTHO05D000040 2.2e-06 55.1 41 56.1
CSS0004210 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 2.8e-06 54.7 42 61.9
CSS0004543 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 2.8e-06 54.7 42 61.9
FvH4_7g22630 Fragaria vesca HOM05D000025 ORTHO05D000040 2.8e-06 54.7 40 70.0
FAN06G2437 Fragaria x ananassa HOM05D000025 ORTHO05D000040 2.8e-06 54.7 40 70.0
FAN06G4222 Fragaria x ananassa HOM05D000025 ORTHO05D000040 2.8e-06 54.7 40 70.0
FAN15G1976 Fragaria x ananassa HOM05D000025 ORTHO05D000040 2.8e-06 54.7 40 70.0
Nn4g22555 Nelumbo nucifera HOM05D000025 ORTHO05D000040 2.8e-06 54.7 39 66.7
CSS0048024 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 3.7e-06 54.3 44 68.2
Carub.0005s1447 Capsella rubella HOM05D000025 ORTHO05D000040 3.7e-06 54.3 53 58.5
FAN01G0647 Fragaria x ananassa HOM05D000025 ORTHO05D000040 3.7e-06 54.3 40 67.5
Lsat_1_v5_gn_4_76080 Lactuca sativa HOM05D000025 ORTHO05D000040 3.7e-06 54.3 40 65.0
MD06G1163800 Malus domestica HOM05D000025 ORTHO05D000040 3.7e-06 54.3 39 69.2
MSTRG.4312 Avicennia marina HOM05D000025 ORTHO05D000040 4.8e-06 53.9 39 66.7
CSS0042891 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 4.8e-06 53.9 44 68.2
CiPaw.12G032600 Carya illinoinensis HOM05D000025 ORTHO05D000040 4.8e-06 53.9 42 61.9
DCAR_026180 Daucus carota HOM05D000025 ORTHO05D000040 4.8e-06 53.9 41 58.5
Glyma.09G142500 Glycine max HOM05D000025 ORTHO05D000040 4.8e-06 53.9 44 54.5
QL10p008346 Quercus lobata HOM05D000025 ORTHO05D000040 4.8e-06 53.9 41 63.4
Sabra12G0064700 Salix brachista HOM05D000025 ORTHO05D000040 4.8e-06 53.9 45 60.0
Dinv10280 Davidia involucrata HOM05D000025 ORTHO05D000040 6.3e-06 53.5 55 58.2
Dinv20584 Davidia involucrata HOM05D000025 ORTHO05D000040 6.3e-06 53.5 52 57.7
Dinv38507 Davidia involucrata HOM05D000025 ORTHO05D000040 6.3e-06 53.5 40 65.0
Dinv38514 Davidia involucrata HOM05D000025 ORTHO05D000040 6.3e-06 53.5 40 67.5
FAN01G2759 Fragaria x ananassa HOM05D000025 ORTHO05D000040 6.3e-06 53.5 56 53.6
Lsat_1_v5_gn_4_75941 Lactuca sativa HOM05D000025 ORTHO05D000040 6.3e-06 53.5 40 62.5
MD14G1163200 Malus domestica HOM05D000025 ORTHO05D000040 6.3e-06 53.5 45 57.8
RcHm_v2.0_Chr1g0368221 Rosa chinensis HOM05D000025 ORTHO05D000040 6.3e-06 53.5 40 65.0
CSS0045932 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 8.2e-06 53.1 42 61.9
CSS0049277 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000040 8.2e-06 53.1 39 69.2
CARHR056050 Cardamine hirsuta HOM05D000025 ORTHO05D000040 8.2e-06 53.1 61 50.8
CiPaw.11G017300 Carya illinoinensis HOM05D000025 ORTHO05D000040 8.2e-06 53.1 57 56.1
HanXRQChr04g0100911 Helianthus annuus HOM05D000025 ORTHO05D000040 8.2e-06 53.1 53 58.5
PGR083G2615 Punica granatum HOM05D000025 ORTHO05D000040 8.2e-06 53.1 55 56.4
RcHm_v2.0_Chr7g0192181 Rosa chinensis HOM05D000025 ORTHO05D000040 8.2e-06 53.1 48 58.3
SalBow5G2098 Salvia bowleyana HOM05D000025 ORTHO05D000040 8.2e-06 53.1 59 52.5
TPR.G12120 Trifolium pratense HOM05D000025 ORTHO05D000040 8.2e-06 53.1 56 50.0
vmacro22883 Vaccinium macrocarpon HOM05D000025 ORTHO05D000040 8.2e-06 53.1 43 65.1


User provided reference genes

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