Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A85T107 Lonicera japonica HOM05D002313 ORTHO05D013935 8.8e-46 186.4 84 100.0
Eucgr.K02185 Eucalyptus grandis HOM05D002313 ORTHO05D003747 1.4e-11 72.8 55 60.0
Nn3g16203 Nelumbo nucifera HOM05D002313 ORTHO05D003747 1.4e-11 72.8 55 60.0
MBI11_g17277_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 1.9e-11 72.4 55 58.2
PGR004G0406 Punica granatum HOM05D002313 ORTHO05D003747 1.9e-11 72.4 55 58.2
CDE05G2049 Ceratophyllum demersum HOM05D002313 ORTHO05D003747 2.4e-11 72.0 55 61.8
MSTRG.9381 Avicennia marina HOM05D002313 ORTHO05D003747 3.2e-11 71.6 56 57.1
TAR622G1219 Trochodendron aralioides HOM05D002313 ORTHO05D003747 3.2e-11 71.6 55 58.2
GSVIVG01005677001 Vitis vinifera HOM05D002313 ORTHO05D003747 3.2e-11 71.6 55 58.2
Hma1.2p1_1333F.1_g276220 Hydrangea macrophylla HOM05D002313 ORTHO05D003747 5.4e-11 70.9 55 60.0
QL10p000004 Quercus lobata HOM05D002313 ORTHO05D003747 5.4e-11 70.9 55 58.2
QL10p000189 Quercus lobata HOM05D002313 ORTHO05D003747 5.4e-11 70.9 55 58.2
Sabra15G0131500 Salix brachista HOM05D002313 ORTHO05D003747 5.4e-11 70.9 55 60.0
MBI07_g42015_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 7.1e-11 70.5 55 58.2
Aqoxy3G01983 Aquilegia oxysepala HOM05D002313 ORTHO05D003747 1.2e-10 69.7 55 56.4
CSS0013451 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D003747 1.2e-10 69.7 55 60.0
ClCG06G018430 Citrullus lanatus HOM05D002313 ORTHO05D003747 1.2e-10 69.7 55 56.4
MELO3C026154.2 Cucumis melo HOM05D002313 ORTHO05D003747 1.2e-10 69.7 55 56.4
CsaV3_1G000020 Cucumis sativus L. HOM05D002313 ORTHO05D003747 1.2e-10 69.7 55 56.4
Dinv13697 Davidia involucrata HOM05D002313 ORTHO05D003747 1.2e-10 69.7 58 55.2
CDE05G1195 Ceratophyllum demersum HOM05D002313 ORTHO05D003747 1.6e-10 69.3 55 60.0
Potri.015G109300 Populus trichocarpa HOM05D002313 ORTHO05D003747 2.1e-10 68.9 55 56.4
TWI14G0055 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 2.1e-10 68.9 55 56.4
TWI23G0679 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 2.1e-10 68.9 55 56.4
PSO017G3625 Papaver somniferum HOM05D002313 ORTHO05D003747 2.7e-10 68.6 55 54.5
PSO478G1808 Papaver somniferum HOM05D002313 ORTHO05D003747 2.7e-10 68.6 55 54.5
Actinidia08918 Actinidia chinensis HOM05D002313 ORTHO05D003747 3.5e-10 68.2 55 58.2
Cpa.g.sc13.196 Carica papaya HOM05D002313 ORTHO05D003747 3.5e-10 68.2 55 54.5
Duzib084G0519 Durio zibethinus HOM05D002313 ORTHO05D003747 3.5e-10 68.2 55 56.4
Duzib205G0651 Durio zibethinus HOM05D002313 ORTHO05D003747 3.5e-10 68.2 55 56.4
Gohir.A11G039100 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.5e-10 68.2 55 54.5
Gohir.D11G042400 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.5e-10 68.2 55 54.5
Gorai.007G045600 Gossypium raimondii HOM05D002313 ORTHO05D003747 3.5e-10 68.2 55 54.5
MSTRG.4649 Avicennia marina HOM05D002313 ORTHO05D003747 4.6e-10 67.8 56 53.6
CSS0019907 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 4.6e-10 67.8 53 60.4
Haze_07080 Corylus avellana HOM05D002313 ORTHO05D003747 4.6e-10 67.8 55 58.2
Sed0025222 Sechium edule HOM05D002313 ORTHO05D003747 4.6e-10 67.8 55 54.5
SGA_v2.0_scaffold40G15690 Striga asiatica HOM05D002313 ORTHO05D003747 4.6e-10 67.8 56 51.8
SGA_v2.0_scaffold74G24624 Striga asiatica HOM05D002313 ORTHO05D003747 4.6e-10 67.8 56 51.8
arahy.Tifrunner.gnm1.ann1.GTN7VM Arachis hypogaea HOM05D002313 ORTHO05D003747 6.0e-10 67.4 55 56.4
arahy.Tifrunner.gnm1.ann1.K1HEP6 Arachis hypogaea HOM05D002313 ORTHO05D003747 6.0e-10 67.4 55 56.4
CANSAT56G3711 Cannabis sativa HOM05D002313 ORTHO05D003747 6.0e-10 67.4 55 54.5
vmacro19101 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 6.0e-10 67.4 55 58.2
SalBow1G2272 Salvia bowleyana HOM05D002313 ORTHO05D003747 7.8e-10 67.0 56 51.8
Thecc.03G143000 Theobroma cacao HOM05D002313 ORTHO05D003747 7.8e-10 67.0 55 56.4
TWI39G1002 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 7.8e-10 67.0 55 54.5
Zm00001eb242260 Zea mays HOM05D002313 ORTHO05D003747 7.8e-10 67.0 55 54.5
FvH4_5g09960 Fragaria vesca HOM05D002313 ORTHO05D003747 1.0e-09 66.6 55 52.7
FAN04G2635 Fragaria x ananassa HOM05D002313 ORTHO05D003747 1.0e-09 66.6 55 52.7
FAN08G2499 Fragaria x ananassa HOM05D002313 ORTHO05D003747 1.0e-09 66.6 55 52.7
FAN18G4031 Fragaria x ananassa HOM05D002313 ORTHO05D003747 1.0e-09 66.6 55 52.7
Cc04_g05640 Coffea canephora HOM05D002313 ORTHO05D003747 1.3e-09 66.2 55 54.5
Lj9C488T17 Lonicera japonica HOM05D002313 ORTHO05D003747 1.3e-09 66.2 55 58.2
Nitab4.5_0000976g0220 Nicotiana tabacum HOM05D002313 ORTHO05D003747 1.3e-09 66.2 55 52.7
Nitab4.5_0011883g0030 Nicotiana tabacum HOM05D002313 ORTHO05D003747 1.3e-09 66.2 55 52.7
Os02g0523500 Oryza sativa ssp. japonica HOM05D002313 ORTHO05D003747 1.3e-09 66.2 55 54.5
CiPaw.12G000200 Carya illinoinensis HOM05D002313 ORTHO05D003747 1.7e-09 65.9 55 52.7
Ciclev10030606m.g Citrus clementina HOM05D002313 ORTHO05D003747 1.7e-09 65.9 55 50.9
Zm00001eb180670 Zea mays HOM05D002313 ORTHO05D003747 1.7e-09 65.9 55 52.7
Sed0026881 Sechium edule HOM05D002313 ORTHO05D003747 2.3e-09 65.5 55 52.7
unitig_736.g22833 Utricularia gibba HOM05D002313 ORTHO05D003747 2.3e-09 65.5 55 50.9
vmacro16771 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 2.3e-09 65.5 55 52.7
CAN.G1008.40 Capsicum annuum HOM05D002313 ORTHO05D003747 3.0e-09 65.1 55 50.9
Potri.012G111200 Populus trichocarpa HOM05D002313 ORTHO05D003747 3.0e-09 65.1 55 54.5
Solyc03g118020.3 Solanum lycopersicum HOM05D002313 ORTHO05D003747 3.0e-09 65.1 55 50.9
Sopen03g036920 Solanum pennellii HOM05D002313 ORTHO05D003747 3.0e-09 65.1 55 50.9
PGSC0003DMG400014229 Solanum tuberosum HOM05D002313 ORTHO05D003747 3.0e-09 65.1 55 50.9
Actinidia25503 Actinidia chinensis HOM05D002313 ORTHO05D003747 3.9e-09 64.7 55 56.4
Gohir.A12G194700 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.9e-09 64.7 55 49.1
Gorai.008G211700 Gossypium raimondii HOM05D002313 ORTHO05D003747 3.9e-09 64.7 55 49.1
Manes.06G128300 Manihot esculenta HOM05D002313 ORTHO05D003747 3.9e-09 64.7 55 54.5
Nitab4.5_0002540g0070 Nicotiana tabacum HOM05D002313 ORTHO05D003747 3.9e-09 64.7 55 49.1
Nitab4.5_0004781g0060 Nicotiana tabacum HOM05D002313 ORTHO05D003747 3.9e-09 64.7 55 49.1
unitig_899.g14825 Utricularia gibba HOM05D002313 ORTHO05D003747 3.9e-09 64.7 55 50.9
CiPaw.11G000500 Carya illinoinensis HOM05D002313 ORTHO05D003747 5.1e-09 64.3 55 52.7
Gohir.D12G197100 Gossypium hirsutum HOM05D002313 ORTHO05D003747 5.1e-09 64.3 55 47.3
Lalb_Chr08g0237631 Lupinus albus HOM05D002313 ORTHO05D003747 5.1e-09 64.3 55 50.9
Manes.14G043200 Manihot esculenta HOM05D002313 ORTHO05D003747 5.1e-09 64.3 55 52.7
vmacro16769 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 5.1e-09 64.3 54 53.7
Peaxi162Scf00835g00334 Petunia axillaris HOM05D002313 ORTHO05D003747 6.6e-09 63.9 55 49.1
RcHm_v2.0_Chr7g0188331 Rosa chinensis HOM05D002313 ORTHO05D003747 6.6e-09 63.9 55 50.9
Atru.chr6.1949 Acer truncatum HOM05D002313 ORTHO05D003747 8.7e-09 63.5 55 54.5
Actinidia18283 Actinidia chinensis HOM05D002313 ORTHO05D013935 1.1e-08 63.2 55 56.4
BcaC03g18096 Brassica carinata HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 52.7
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 1.1e-08 63.2 55 52.7
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 52.7
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 52.7
Glyma.04G203000 Glycine max HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Glyma.05G199100 Glycine max HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Glyma.06G162500 Glycine max HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Glyma.08G006400 Glycine max HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Lalb_Chr11g0068981 Lupinus albus HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Lalb_Chr11g0069041 Lupinus albus HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Phvul.002G280100 Phaseolus vulgaris HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Psat0s836g0040 Pisum sativum HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 52.7
Solyc03g118010.4 Solanum lycopersicum HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Sopen03g036910 Solanum pennellii HOM05D002313 ORTHO05D003747 1.1e-08 63.2 55 49.1
Aqoxy5G02974 Aquilegia oxysepala HOM05D002313 ORTHO05D003747 1.5e-08 62.8 55 50.9
Oeu013668.4 Olea europaea HOM05D002313 ORTHO05D003747 1.5e-08 62.8 55 52.7
Ca_17048_v3 Cicer arietinum L. HOM05D002313 ORTHO05D003747 1.9e-08 62.4 55 52.7
Medtr3g098420 Medicago truncatula HOM05D002313 ORTHO05D003747 1.9e-08 62.4 55 52.7
TPR.G16949 Trifolium pratense HOM05D002313 ORTHO05D003747 1.9e-08 62.4 55 52.7
GSVIVG01032946001 Vitis vinifera HOM05D002313 ORTHO05D003747 1.9e-08 62.4 54 50.0
CSS0014357 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 2.5e-08 62.0 52 57.7
Gohir.A03G055400 Gossypium hirsutum HOM05D002313 ORTHO05D003747 2.5e-08 62.0 55 50.9
Gohir.D03G111200 Gossypium hirsutum HOM05D002313 ORTHO05D003747 2.5e-08 62.0 55 50.9
Lj1g0018640 Lotus japonicus HOM05D002313 ORTHO05D003747 2.5e-08 62.0 55 49.1
Peaxi162Scf00314g00724 Petunia axillaris HOM05D002313 ORTHO05D003747 2.5e-08 62.0 55 49.1
VMungo0251G2525 Vigna mungo HOM05D002313 ORTHO05D003747 2.5e-08 62.0 55 47.3
Ca_14261_v3 Cicer arietinum L. HOM05D002313 ORTHO05D013935 3.3e-08 61.6 55 50.9
Pp3c12_4000 Physcomitrium patens HOM05D002313 ORTHO05D003747 3.3e-08 61.6 52 51.9
Migut.D01169 Erythranthe guttata HOM05D002313 ORTHO05D003747 4.3e-08 61.2 56 48.2
Psat7g040120 Pisum sativum HOM05D002313 ORTHO05D003747 4.3e-08 61.2 55 47.3
arahy.Tifrunner.gnm1.ann1.039TZW Arachis hypogaea HOM05D002313 ORTHO05D003747 5.6e-08 60.8 54 46.3
arahy.Tifrunner.gnm1.ann1.W6YZV5 Arachis hypogaea HOM05D002313 ORTHO05D003747 5.6e-08 60.8 54 46.3
Gorai.003G117700 Gossypium raimondii HOM05D002313 ORTHO05D003747 5.6e-08 60.8 55 49.1
COL.COLO4_37280 Corchorus olitorius HOM05D002313 ORTHO05D003747 7.3e-08 60.5 55 47.3
CSS0036627 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 9.6e-08 60.1 52 55.8
TPR.G12895 Trifolium pratense HOM05D002313 ORTHO05D003747 9.6e-08 60.1 55 45.5
Sabra12G0081000 Salix brachista HOM05D002313 ORTHO05D003747 1.2e-07 59.7 55 50.9
Phvul.009G159000 Phaseolus vulgaris HOM05D002313 ORTHO05D003747 2.1e-07 58.9 52 48.1
VMungo1309G1375 Vigna mungo HOM05D002313 ORTHO05D003747 2.1e-07 58.9 52 48.1
BcaC01g02429 Brassica carinata HOM05D002313 ORTHO05D003747 2.8e-07 58.5 56 48.2
C03p65380 Brassica napus HOM05D002313 ORTHO05D003747 2.8e-07 58.5 56 48.2
BcaB02g09601 Brassica carinata HOM05D002313 ORTHO05D003747 3.6e-07 58.2 56 48.2
BcaNung01419 Brassica carinata HOM05D002313 ORTHO05D003747 3.6e-07 58.2 56 48.2
A06p28430 Brassica napus HOM05D002313 ORTHO05D003747 3.6e-07 58.2 56 48.2
BraA06t25787Z Brassica rapa HOM05D002313 ORTHO05D003747 3.6e-07 58.2 56 48.2
ATR0582G099 Amborella trichopoda HOM05D002313 ORTHO05D003747 4.7e-07 57.8 55 49.1
CARHR275540 Cardamine hirsuta HOM05D002313 ORTHO05D003747 4.7e-07 57.8 56 48.2
Dinv23243 Davidia involucrata HOM05D002313 ORTHO05D003747 4.7e-07 57.8 48 54.2
Hund04139 Selenicereus undatus HOM05D002313 ORTHO05D003747 4.7e-07 57.8 55 50.9
SEGI_32934 Sequoiadendron giganteum HOM05D002313 ORTHO05D003747 6.2e-07 57.4 55 45.5
DCAR_025630 Daucus carota HOM05D002313 ORTHO05D003747 1.1e-06 56.6 50 52.0
HPP92_007020 Vanilla planifolia HOM05D002313 ORTHO05D003747 1.1e-06 56.6 55 45.5
Aa31LG11G1700 Aethionema arabicum HOM05D002313 ORTHO05D003747 1.4e-06 56.2 56 46.4
AL8G38540 Arabidopsis lyrata HOM05D002313 ORTHO05D003747 1.4e-06 56.2 56 46.4
AT5G61780 Arabidopsis thaliana HOM05D002313 ORTHO05D003747 1.4e-06 56.2 56 46.4
BcaB01g06036 Brassica carinata HOM05D002313 ORTHO05D003747 1.4e-06 56.2 55 47.3
BcaB07g29821 Brassica carinata HOM05D002313 ORTHO05D003747 1.4e-06 56.2 56 46.4
C03p03640 Brassica napus HOM05D002313 ORTHO05D003747 1.4e-06 56.2 55 47.3
BolC3t12903H Brassica oleracea HOM05D002313 ORTHO05D003747 1.4e-06 56.2 55 47.3
Thhalv10003594m.g Eutrema salsugineum HOM05D002313 ORTHO05D003747 1.4e-06 56.2 56 46.4
Rhsim08G0199800 Rhododendron simsii HOM05D002313 ORTHO05D003747 1.4e-06 56.2 55 54.5
Carub.0006s0632 Capsella rubella HOM05D002313 ORTHO05D003747 2.4e-06 55.5 56 46.4
HanXRQChr16g0499321 Helianthus annuus HOM05D002313 ORTHO05D003747 2.4e-06 55.5 54 50.0
PRCOL_00005726 Prasinoderma coloniale HOM05D002313 ORTHO05D003747 2.4e-06 55.5 53 47.2
Aa31LG3G19020 Aethionema arabicum HOM05D002313 ORTHO05D003747 3.1e-06 55.1 56 44.6
AL6G17650 Arabidopsis lyrata HOM05D002313 ORTHO05D003747 3.1e-06 55.1 56 44.6
AT5G07350 Arabidopsis thaliana HOM05D002313 ORTHO05D003747 3.1e-06 55.1 67 40.3
CARHR205800 Cardamine hirsuta HOM05D002313 ORTHO05D003747 3.1e-06 55.1 56 44.6
Thhalv10012565m.g Eutrema salsugineum HOM05D002313 ORTHO05D003747 3.1e-06 55.1 56 44.6
Rhsim12G0182300 Rhododendron simsii HOM05D002313 ORTHO05D003747 3.1e-06 55.1 55 52.7
Sp2g24980 Schrenkiella parvula HOM05D002313 ORTHO05D003747 4.0e-06 54.7 56 46.4
Lj4g0022403 Lotus japonicus HOM05D002313 ORTHO05D003747 5.2e-06 54.3 51 47.1
Prupe.5G139000 Prunus persica HOM05D002313 ORTHO05D003747 5.2e-06 54.3 50 48.0
RcHm_v2.0_Chr6g0297481 Rosa chinensis HOM05D002313 ORTHO05D003747 5.2e-06 54.3 52 50.0
THA.LOC104801730 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 5.2e-06 54.3 56 44.6
THA.LOC104818290 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 5.2e-06 54.3 56 44.6
HanXRQChr09g0274371 Helianthus annuus HOM05D002313 ORTHO05D003747 6.9e-06 53.9 54 48.1
Lsat_1_v5_gn_1_29960 Lactuca sativa HOM05D002313 ORTHO05D003747 6.9e-06 53.9 54 46.3
Lalb_Chr23g0272841 Lupinus albus HOM05D002313 ORTHO05D003747 6.9e-06 53.9 55 43.6
MD00G1076400 Malus domestica HOM05D002313 ORTHO05D003747 9.0e-06 53.5 52 46.2
MD14G1144600 Malus domestica HOM05D002313 ORTHO05D003747 9.0e-06 53.5 52 46.2


User provided reference genes

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