Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A0T7 Lonicera japonica HOM05D000101 ORTHO05D002559 8.5e-81 303.5 144 100.0
Lj5C575T1 Lonicera japonica HOM05D000101 ORTHO05D002559 3.5e-58 228.4 203 61.6
Lj5C16T1 Lonicera japonica HOM05D000101 ORTHO05D002559 5.9e-58 227.6 203 61.6
Lj5C16T0 Lonicera japonica HOM05D000101 ORTHO05D002559 1.7e-57 226.1 203 61.1
Lj5P570T10 Lonicera japonica HOM05D000101 ORTHO05D002559 1.7e-57 226.1 203 61.1
Lj5P572T12 Lonicera japonica HOM05D000101 ORTHO05D002559 4.3e-56 221.5 203 60.1
Lj5A585G44 Lonicera japonica HOM05D001102 ORTHO05D002559 3.0e-54 215.3 193 61.1
Lj5P569T16 Lonicera japonica HOM05D000101 ORTHO05D002559 6.8e-54 214.2 195 60.5
Lj5A581T13 Lonicera japonica HOM05D000101 ORTHO05D002559 8.9e-46 187.2 173 59.0
Lj5P304T28 Lonicera japonica HOM05D000101 ORTHO05D002559 1.7e-36 156.4 203 44.8
Lj5A383G14 Lonicera japonica HOM05D000101 ORTHO05D002559 3.7e-36 155.2 169 52.7
Lj5P293T6 Lonicera japonica HOM05D000101 ORTHO05D002559 3.7e-36 155.2 199 46.2
Lj5A359T54 Lonicera japonica HOM05D000101 ORTHO05D002559 2.7e-34 149.1 203 43.3
Lj5C375T3 Lonicera japonica HOM05D000101 ORTHO05D002559 3.3e-32 142.1 204 42.6
Lj5P583T56 Lonicera japonica HOM05D000101 ORTHO05D002559 9.5e-32 140.6 91 76.9
Lj5P578T29 Lonicera japonica HOM05D000101 ORTHO05D002559 1.2e-31 140.2 91 76.9
Lj5C281T0 Lonicera japonica HOM05D000101 ORTHO05D002559 3.6e-31 138.7 193 40.4
Lj5C278T6 Lonicera japonica HOM05D000101 ORTHO05D002559 4.7e-31 138.3 210 41.0
Lj5A359G55 Lonicera japonica HOM05D000101 ORTHO05D002559 1.4e-30 136.7 203 41.9
Lj5A362T42 Lonicera japonica HOM05D000101 ORTHO05D002559 2.4e-30 136.0 203 41.4
Lj5A365T20 Lonicera japonica HOM05D000101 ORTHO05D002559 2.4e-30 136.0 202 42.1
Dinv19438 Davidia involucrata HOM05D000208 ORTHO05D002559 2.6e-29 132.5 208 39.9
Lj5P601T33 Lonicera japonica HOM05D000101 ORTHO05D002559 2.6e-29 132.5 203 42.9
Lj5P272T8 Lonicera japonica HOM05D000101 ORTHO05D002559 6.4e-28 127.9 191 42.4
Lj5A278G73 Lonicera japonica HOM05D000101 ORTHO05D002559 8.4e-28 127.5 202 39.1
Lj5A379T19 Lonicera japonica HOM05D000101 ORTHO05D002559 1.1e-27 127.1 203 39.9
Lj5A17G12 Lonicera japonica HOM05D001102 ORTHO05D002559 1.4e-27 126.7 91 70.3
Lj5C271T17 Lonicera japonica HOM05D000041 ORTHO05D002559 2.1e-26 122.9 181 42.5
Lj5C279G0 Lonicera japonica HOM05D000196 ORTHO05D001288 2.1e-26 122.9 205 38.0
Lj5C280G1 Lonicera japonica HOM05D000101 ORTHO05D002559 3.5e-26 122.1 205 37.1
Lj5A277G40 Lonicera japonica HOM05D000101 ORTHO05D002559 2.3e-25 119.4 210 37.1
Lj5A274T85 Lonicera japonica HOM05D000381 ORTHO05D002559 9.6e-24 114.0 216 36.1
Lj5C361G6 Lonicera japonica HOM05D000101 ORTHO05D002559 2.1e-23 112.8 176 40.3
Lj5P274T71 Lonicera japonica HOM05D000101 ORTHO05D002559 2.8e-23 112.5 203 34.5
Lj5A575T32 Lonicera japonica HOM05D001102 ORTHO05D002559 4.4e-21 105.1 143 46.2
Lj5P606T31 Lonicera japonica HOM05D000101 ORTHO05D002559 1.1e-19 100.5 105 55.2
Actinidia00161 Actinidia chinensis HOM05D000101 ORTHO05D002559 1.9e-19 99.8 207 32.9
Lj5C275T7 Lonicera japonica HOM05D000101 ORTHO05D002559 1.9e-19 99.8 211 33.6
Lj5P602T34 Lonicera japonica HOM05D000101 ORTHO05D002559 1.6e-18 96.7 105 53.3
DCAR_001712 Daucus carota HOM05D000005 ORTHO05D002559 2.1e-18 96.3 185 35.1
CSS0049217 Camellia sinensis var. sinensis HOM05D000137 ORTHO05D002559 2.7e-18 95.9 204 31.9
DCAR_014285 Daucus carota HOM05D000083 ORTHO05D001732 1.0e-17 94.0 185 33.0
Actinidia01623 Actinidia chinensis HOM05D000101 ORTHO05D002559 1.3e-17 93.6 192 32.3
Lj1P695T13 Lonicera japonica HOM05D000101 ORTHO05D002559 2.3e-17 92.8 79 62.0
Lj5C275T5 Lonicera japonica HOM05D000101 ORTHO05D002559 3.0e-17 92.4 204 32.8
Lj5P384T4 Lonicera japonica HOM05D000101 ORTHO05D002559 6.6e-17 91.3 87 57.5
Lj5C366T6 Lonicera japonica HOM05D000101 ORTHO05D002559 1.5e-16 90.1 107 45.8
Lj5P273T15 Lonicera japonica HOM05D000101 ORTHO05D002559 1.9e-16 89.7 170 33.5
DCAR_001709 Daucus carota HOM05D000101 ORTHO05D002559 5.6e-16 88.2 178 31.5
Actinidia00159 Actinidia chinensis HOM05D000101 ORTHO05D002559 1.6e-15 86.7 154 35.1
CSS0045387 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 1.6e-15 86.7 204 30.9
ECA234G0576 Erigeron canadensis HOM05D000101 ORTHO05D002559 1.6e-15 86.7 205 29.3
HanXRQChr10g0294651 Helianthus annuus HOM05D000101 ORTHO05D002559 1.6e-15 86.7 206 30.6
Lj5P374T11 Lonicera japonica HOM05D000101 ORTHO05D002559 2.1e-15 86.3 84 57.1
Actinidia38983 Actinidia chinensis HOM05D000101 ORTHO05D002559 8.1e-15 84.3 204 30.9
Lj5C274T5 Lonicera japonica HOM05D000101 ORTHO05D002559 1.8e-14 83.2 102 46.1
Rhsim11G0064600 Rhododendron simsii HOM05D000101 ORTHO05D002559 1.8e-14 83.2 189 34.4
RhsimUnG0075200 Rhododendron simsii HOM05D000101 ORTHO05D002559 3.1e-14 82.4 207 31.4
Rhsim11G0062200 Rhododendron simsii HOM05D000101 ORTHO05D002559 5.3e-14 81.6 189 33.9
vmacro01688 Vaccinium macrocarpon HOM05D000606 ORTHO05D002559 6.9e-14 81.3 180 30.0
RhsimUnG0074300 Rhododendron simsii HOM05D000101 ORTHO05D002559 1.5e-13 80.1 207 31.9
vmacro01694 Vaccinium macrocarpon HOM05D000009 ORTHO05D002559 7.6e-13 77.8 194 28.9
vmacro22642 Vaccinium macrocarpon HOM05D000046 ORTHO05D002559 7.6e-13 77.8 160 31.2
HanXRQChr14g0449951 Helianthus annuus HOM05D000819 ORTHO05D002559 9.9e-13 77.4 203 29.1
Lsat_1_v5_gn_9_121380 Lactuca sativa HOM05D000041 ORTHO05D000452 9.9e-13 77.4 169 30.8
GSVIVG01029713001 Vitis vinifera HOM05D000101 ORTHO05D002559 1.3e-12 77.0 123 37.4
Lsat_1_v5_gn_9_121300 Lactuca sativa HOM05D000041 ORTHO05D002559 1.7e-12 76.6 169 33.7
RhsimUnG0031900 Rhododendron simsii HOM05D000117 ORTHO05D002559 1.7e-12 76.6 179 29.1
QL02p102131 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-12 75.9 198 29.3
Rhsim09G0175600 Rhododendron simsii HOM05D000022 ORTHO05D004590 2.9e-12 75.9 170 29.4
Rhsim05G0066300 Rhododendron simsii HOM05D000083 ORTHO05D001732 3.8e-12 75.5 180 29.4
Rhsim11G0119700 Rhododendron simsii HOM05D000101 ORTHO05D002559 4.9e-12 75.1 209 29.7
Rhsim11G0120200 Rhododendron simsii HOM05D000101 ORTHO05D002559 4.9e-12 75.1 209 29.7
vmacro01695 Vaccinium macrocarpon HOM05D000046 ORTHO05D002559 6.4e-12 74.7 176 27.3
Dinv19437 Davidia involucrata HOM05D000101 ORTHO05D002559 8.4e-12 74.3 127 39.4
Rhsim10G0148700 Rhododendron simsii HOM05D000101 ORTHO05D002559 8.4e-12 74.3 169 29.6
Rhsim11G0120000 Rhododendron simsii HOM05D000046 ORTHO05D002559 1.9e-11 73.2 169 30.2
TAR624G0061 Trochodendron aralioides HOM05D000101 ORTHO05D002559 1.9e-11 73.2 174 28.2
Actinidia29427 Actinidia chinensis HOM05D000101 ORTHO05D002559 2.4e-11 72.8 171 30.4
QL09p032224 Quercus lobata HOM05D000101 ORTHO05D002559 3.2e-11 72.4 161 30.4
Eucgr.G00088 Eucalyptus grandis HOM05D000101 ORTHO05D002559 4.2e-11 72.0 169 30.8
QL02p102748 Quercus lobata HOM05D000196 ORTHO05D002559 4.2e-11 72.0 198 28.8
Haze_10016 Corylus avellana HOM05D000101 ORTHO05D002559 5.4e-11 71.6 153 34.0
Lj5A360G9 Lonicera japonica HOM05D000101 ORTHO05D002559 5.4e-11 71.6 64 54.7
arahy.Tifrunner.gnm1.ann1.WY3QF4 Arachis hypogaea HOM05D000101 ORTHO05D002559 9.3e-11 70.9 195 26.2
Eucgr.H05031 Eucalyptus grandis HOM05D000046 ORTHO05D002559 9.3e-11 70.9 203 28.1
QL02p102304 Quercus lobata HOM05D000005 ORTHO05D002559 1.2e-10 70.5 174 28.7
QL02p102720 Quercus lobata HOM05D000101 ORTHO05D002559 1.2e-10 70.5 145 33.1
QL02p102939 Quercus lobata HOM05D000101 ORTHO05D002559 1.2e-10 70.5 174 28.7
Rhsim09G0174900 Rhododendron simsii HOM05D000101 ORTHO05D002559 1.2e-10 70.5 185 27.6
QL02p102218 Quercus lobata HOM05D000101 ORTHO05D002559 1.6e-10 70.1 198 26.8
Eucgr.G00163 Eucalyptus grandis HOM05D000101 ORTHO05D002559 2.1e-10 69.7 203 27.1
Rhsim11G0119200 Rhododendron simsii HOM05D000101 ORTHO05D002559 2.1e-10 69.7 168 26.8
Thecc.02G013600 Theobroma cacao HOM05D000101 ORTHO05D002559 2.1e-10 69.7 114 37.7
HanXRQChr05g0159041 Helianthus annuus HOM05D000097 ORTHO05D000041 2.7e-10 69.3 204 28.9
PGR042G1796 Punica granatum HOM05D000101 ORTHO05D002559 2.7e-10 69.3 165 29.7
arahy.Tifrunner.gnm1.ann1.WQN42S Arachis hypogaea HOM05D000101 ORTHO05D002559 3.5e-10 68.9 195 27.2
Eucgr.G00086 Eucalyptus grandis HOM05D000244 ORTHO05D002559 3.5e-10 68.9 171 26.9
PGR042G3789 Punica granatum HOM05D000660 ORTHO05D002559 4.6e-10 68.6 161 26.1
Rhsim11G0119500 Rhododendron simsii HOM05D000046 ORTHO05D002559 4.6e-10 68.6 184 29.3
RhsimUnG0032300 Rhododendron simsii HOM05D000046 ORTHO05D002559 4.6e-10 68.6 184 29.3
Actinidia38978 Actinidia chinensis HOM05D000512 ORTHO05D002559 7.9e-10 67.8 195 27.7
arahy.Tifrunner.gnm1.ann1.E3SE4T Arachis hypogaea HOM05D000101 ORTHO05D002559 7.9e-10 67.8 193 26.4
Eucgr.G00106 Eucalyptus grandis HOM05D000101 ORTHO05D002559 7.9e-10 67.8 171 26.9
PGR042G2007 Punica granatum HOM05D000054 ORTHO05D002559 7.9e-10 67.8 164 29.3
Eucgr.G00253 Eucalyptus grandis HOM05D000101 ORTHO05D002559 1.3e-09 67.0 197 24.9
Thecc.02G013200 Theobroma cacao HOM05D000101 ORTHO05D002559 1.3e-09 67.0 169 30.2
arahy.Tifrunner.gnm1.ann1.TAM8B0 Arachis hypogaea HOM05D000101 ORTHO05D002559 2.3e-09 66.2 193 25.9
PGR042G2349 Punica granatum HOM05D000101 ORTHO05D002559 3.9e-09 65.5 136 30.9
Dinv19435 Davidia involucrata HOM05D000101 ORTHO05D002559 5.1e-09 65.1 53 54.7
CSS0025266 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 6.7e-09 64.7 53 50.9
Eucgr.G00161 Eucalyptus grandis HOM05D000046 ORTHO05D002559 6.7e-09 64.7 169 28.4
Eucgr.G00267 Eucalyptus grandis HOM05D000101 ORTHO05D002559 6.7e-09 64.7 170 25.3
Eucgr.G00167 Eucalyptus grandis HOM05D000101 ORTHO05D002559 1.1e-08 63.9 113 34.5
Eucgr.G00259 Eucalyptus grandis HOM05D000101 ORTHO05D002559 1.9e-08 63.2 170 25.3
arahy.Tifrunner.gnm1.ann1.B8J05C Arachis hypogaea HOM05D000101 ORTHO05D002559 2.5e-08 62.8 194 25.3
Eucgr.J02654 Eucalyptus grandis HOM05D000101 ORTHO05D002559 2.5e-08 62.8 170 24.7
Manes.10G111380 Manihot esculenta HOM05D000101 ORTHO05D002559 2.5e-08 62.8 167 26.9
Eucgr.G00250 Eucalyptus grandis HOM05D000101 ORTHO05D002559 3.3e-08 62.4 170 24.7
Eucgr.G00252 Eucalyptus grandis HOM05D000101 ORTHO05D002559 3.3e-08 62.4 170 23.5
Eucgr.H05018 Eucalyptus grandis HOM05D000101 ORTHO05D002559 3.3e-08 62.4 154 29.9
CSS0024333 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 5.6e-08 61.6 184 29.3
Haze_00099 Corylus avellana HOM05D000101 ORTHO05D002559 5.6e-08 61.6 168 25.0
Gorai.008G200800 Gossypium raimondii HOM05D000306 ORTHO05D002559 5.6e-08 61.6 196 27.0
Rhsim11G0120900 Rhododendron simsii HOM05D000101 ORTHO05D002559 5.6e-08 61.6 50 52.0
RhsimUnG0080500 Rhododendron simsii HOM05D000101 ORTHO05D002559 7.4e-08 61.2 47 55.3
Gohir.D12G187350 Gossypium hirsutum HOM05D000306 ORTHO05D002559 9.6e-08 60.8 196 27.0
RhsimUnG0063400 Rhododendron simsii HOM05D001102 ORTHO05D002559 9.6e-08 60.8 178 29.2
Haze_10017 Corylus avellana HOM05D000101 ORTHO05D002559 1.3e-07 60.5 170 25.9
Duzib205G1753 Durio zibethinus HOM05D000196 ORTHO05D002559 1.3e-07 60.5 194 26.8
Manes.10G113600 Manihot esculenta HOM05D000101 ORTHO05D002559 1.6e-07 60.1 197 23.9
Lj5P274T83 Lonicera japonica HOM05D000101 ORTHO05D002559 2.1e-07 59.7 53 56.6
GSVIVG01023189001 Vitis vinifera HOM05D000101 ORTHO05D002559 2.1e-07 59.7 168 25.0
GSVIVG01023191001 Vitis vinifera HOM05D000101 ORTHO05D002559 2.1e-07 59.7 168 25.0
Gohir.D10G201750 Gossypium hirsutum HOM05D000378 ORTHO05D002559 2.8e-07 59.3 158 27.2
Gorai.011G226500 Gossypium raimondii HOM05D000378 ORTHO05D002559 2.8e-07 59.3 158 27.2
Thecc.03G111600 Theobroma cacao HOM05D000101 ORTHO05D002559 2.8e-07 59.3 161 26.7
Eucgr.G00152 Eucalyptus grandis HOM05D000101 ORTHO05D002559 3.7e-07 58.9 154 27.3
Glyma.05G165800 Glycine max HOM05D000101 ORTHO05D002559 3.7e-07 58.9 191 26.2
Cfa026046 Carpinus fangiana HOM05D000101 ORTHO05D002559 4.8e-07 58.5 167 24.0
Duzib084G0127 Durio zibethinus HOM05D000101 ORTHO05D002559 4.8e-07 58.5 161 26.7
Rhsim11G0120500 Rhododendron simsii HOM05D000101 ORTHO05D002559 4.8e-07 58.5 48 52.1
Eucgr.J02651 Eucalyptus grandis HOM05D000101 ORTHO05D002559 6.2e-07 58.2 170 24.7
GSVIVG01023173001 Vitis vinifera HOM05D000101 ORTHO05D002559 6.2e-07 58.2 174 27.0
Thecc.03G111100 Theobroma cacao HOM05D000101 ORTHO05D002559 8.1e-07 57.8 161 26.7
RhsimUnG0074500 Rhododendron simsii HOM05D000101 ORTHO05D002559 1.1e-06 57.4 50 50.0
RhsimUnG0074700 Rhododendron simsii HOM05D000101 ORTHO05D002559 1.4e-06 57.0 50 50.0
Lj5C274T18 Lonicera japonica HOM05D000257 ORTHO05D008527 2.4e-06 56.2 62 45.2
Thecc.02G013000 Theobroma cacao HOM05D000101 ORTHO05D002559 2.4e-06 56.2 165 26.1
Thecc.02G013700 Theobroma cacao HOM05D000101 ORTHO05D002559 2.4e-06 56.2 169 24.9
Thecc.03G111400 Theobroma cacao HOM05D002542 ORTHO05D005078 3.1e-06 55.8 164 25.0
Duzib084G1141 Durio zibethinus HOM05D000101 ORTHO05D002559 4.0e-06 55.5 161 26.1
Gohir.A12G184600 Gossypium hirsutum HOM05D000306 ORTHO05D025277 5.3e-06 55.1 161 26.1
Gohir.D12G187550 Gossypium hirsutum HOM05D000101 ORTHO05D002559 5.3e-06 55.1 161 26.7
Lj5P578T38 Lonicera japonica HOM05D000101 ORTHO05D002559 5.3e-06 55.1 24 95.8
Lj5P583T65 Lonicera japonica HOM05D000101 ORTHO05D002559 5.3e-06 55.1 24 95.8
Thecc.02G013400 Theobroma cacao HOM05D000101 ORTHO05D002559 5.3e-06 55.1 165 26.1


User provided reference genes

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