Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 0.0e+00 1446.4 720 100.0
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.7e-283 979.2 659 75.4
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.1e-269 933.3 654 72.2
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 5.6e-266 921.0 671 69.2
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.3e-262 909.8 649 71.2
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.1e-261 906.7 657 70.5
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.6e-260 902.9 667 67.9
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 7.4e-250 867.5 654 67.0
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.9e-247 857.8 658 66.6
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.9e-242 842.8 672 63.2
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.3e-235 819.3 655 63.1
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 5.8e-194 681.8 649 54.4
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 8.3e-193 677.9 662 53.8
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 5.4e-192 675.2 654 53.5
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.2e-191 674.1 650 54.8
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 5.0e-190 668.7 669 51.9
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 5.0e-190 668.7 689 52.1
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.5e-189 667.2 668 52.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.5e-189 667.2 704 52.7
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 2.5e-189 666.4 645 53.5
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.1e-187 659.4 654 52.4
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 8.9e-187 657.9 643 53.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.2e-185 653.3 649 53.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.2e-185 653.3 659 52.0
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.4e-184 650.6 662 52.9
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.0e-182 644.4 691 49.8
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.0e-182 642.9 656 51.1
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 5.0e-182 642.1 647 53.2
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 8.6e-182 641.3 642 51.9
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.9e-181 640.2 684 50.4
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 3.3e-181 639.4 661 51.4
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 5.6e-181 638.6 671 51.4
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.2e-180 637.5 644 51.7
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.8e-180 636.3 650 49.5
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 4.7e-180 635.6 660 51.2
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.4e-179 634.0 642 50.8
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.3e-179 633.3 658 49.8
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.3e-179 633.3 666 48.6
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 6.8e-179 631.7 648 51.1
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 2.6e-178 629.8 650 49.1
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 2.6e-178 629.8 666 50.9
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 4.4e-178 629.0 659 50.2
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 9.9e-178 627.9 652 51.2
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.3e-177 627.5 659 50.5
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.3e-177 627.5 644 52.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.7e-177 627.1 652 48.5
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 2.2e-177 626.7 647 49.1
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 3.7e-177 625.9 647 49.0
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 6.4e-177 625.2 652 50.8
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 6.4e-177 625.2 653 48.5
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.6e-175 620.5 662 52.9
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.6e-175 620.5 660 50.3
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.1e-175 620.2 708 45.5
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 7.8e-175 618.2 660 50.2
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 7.8e-175 618.2 709 47.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 2.3e-174 616.7 666 48.9
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.9e-174 615.9 653 48.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.5e-173 614.0 675 47.9
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.5e-173 614.0 694 48.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.6e-172 610.5 672 47.0
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.1e-171 607.8 650 48.5
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 8.4e-169 598.2 602 49.8
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.4e-168 597.4 648 49.5
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.5e-167 592.8 642 48.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 7.8e-167 591.7 717 46.0
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.7e-166 590.5 700 47.1
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 9.6e-165 584.7 731 46.6
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 2.1e-164 583.6 654 48.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-163 581.3 653 48.9
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-162 577.8 655 48.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.9e-161 573.2 657 47.8
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.6e-159 567.4 647 47.6
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 3.5e-159 566.2 664 46.7
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 2.5e-157 560.1 813 41.7
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.6e-157 558.9 657 47.2
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 9.0e-155 551.6 654 44.8
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.6e-151 539.3 643 48.4
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 7.4e-149 531.9 687 42.5
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 2.0e-146 523.9 695 45.0
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 2.9e-145 520.0 702 42.0
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.6e-143 512.7 692 41.2
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.6e-138 496.9 673 43.8
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.6e-135 487.6 704 41.2
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.0e-134 485.0 545 47.0
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 3.2e-128 463.4 610 43.9
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 4.2e-128 463.0 570 45.3
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 4.7e-119 433.0 591 43.3
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.0e-118 431.8 467 50.3
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 1.8e-118 431.0 461 49.7
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 6.3e-116 422.5 461 49.2
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 8.5e-113 412.1 611 38.3
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.9e-112 411.0 375 56.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 8.8e-110 402.1 639 38.0
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.2e-108 397.5 383 51.4
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.5e-104 384.8 644 37.4
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.2e-93 348.6 334 55.4
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.7e-92 344.7 577 35.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.3e-89 334.3 542 36.0
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 2.5e-88 330.9 268 56.7
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-71 274.2 345 39.7
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.1e-70 270.8 268 56.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 7.3e-64 249.6 192 64.6
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 6.0e-58 229.9 312 43.3
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 3.5e-50 204.1 269 40.1
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-48 197.6 336 33.6
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 7.3e-48 196.4 186 53.2
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 7.6e-45 186.4 236 44.5
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.4e-43 181.4 239 43.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 9.3e-43 179.5 229 43.2
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 2.3e-41 174.9 241 42.7
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-33 149.4 230 37.0
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-30 138.3 190 37.9
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-30 138.3 227 33.9
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.4e-30 138.3 462 27.9
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-30 137.9 284 29.9
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.9e-28 131.3 513 26.3
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-27 129.4 166 44.6
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-26 125.6 203 37.9
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 7.9e-26 123.2 162 41.4
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.3e-25 122.5 319 27.9
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.4e-24 116.7 321 30.2
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.3e-23 115.9 171 39.2
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-23 115.5 155 42.6
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 6.2e-23 113.6 113 49.6
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.2e-23 113.2 128 43.8
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.2e-23 113.2 191 33.5
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.2e-21 109.4 147 38.8
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 7.6e-21 106.7 393 25.2
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 5.0e-20 104.0 92 51.1
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.4e-20 103.2 134 41.0
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-19 102.4 282 28.0
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 4.6e-18 97.4 77 63.6
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-16 92.0 208 31.7
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 9.7e-16 89.7 89 52.8
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 2.4e-14 85.1 76 51.3
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 6.9e-14 83.6 105 47.6
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.9e-11 75.5 86 45.3
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 3.2e-11 74.7 66 56.1
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 5.5e-11 73.9 60 60.0
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.2e-11 73.6 83 43.4
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.4e-11 73.2 95 42.1
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-10 72.8 95 42.1
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.6e-10 70.9 77 48.1
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.0e-09 68.2 95 40.0
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 5.1e-09 67.4 55 52.7
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 6.7e-09 67.0 60 58.3
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 6.7e-09 67.0 83 43.4
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 8.8e-09 66.6 83 47.0
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 3.3e-08 64.7 62 51.6
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 7.4e-08 63.5 83 48.2
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.8e-07 60.8 93 38.7
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 3.1e-06 58.2 44 54.5


User provided reference genes

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