Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 0.0e+00 1143.3 633 100.0
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 5.0e-218 761.5 604 70.4
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 1.3e-210 736.9 605 68.3
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 8.6e-210 734.2 605 68.4
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 2.0e-206 723.0 583 68.1
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 4.4e-206 721.8 603 68.0
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 2.7e-203 712.6 604 70.9
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 2.1e-200 703.0 604 64.7
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 8.6e-194 681.0 596 70.3
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 2.5e-156 556.6 622 53.1
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 7.1e-156 555.1 607 54.5
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.2e-155 554.3 639 52.3
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.1e-155 553.5 594 55.6
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 1.8e-154 550.4 658 52.9
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 5.1e-154 548.9 594 55.4
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 4.3e-153 545.8 594 55.2
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 8.2e-152 541.6 636 55.5
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 9.0e-151 538.1 337 80.7
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 3.4e-150 536.2 626 52.6
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 6.5e-149 531.9 639 55.2
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 6.5e-149 531.9 627 55.3
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.9e-148 530.4 596 53.4
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 3.2e-148 529.6 343 78.1
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 5.5e-148 528.9 636 52.2
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 9.3e-148 528.1 340 80.3
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 9.3e-148 528.1 661 49.3
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 1.6e-147 527.3 358 77.1
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.1e-147 526.9 638 55.6
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 1.3e-146 524.2 342 78.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 3.9e-146 522.7 639 51.0
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 8.7e-146 521.5 640 53.8
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.6e-144 517.3 342 77.5
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.8e-144 516.5 575 54.3
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 6.3e-144 515.4 350 75.4
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 8.2e-144 515.0 502 59.6
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.1e-143 514.6 338 77.8
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.1e-143 514.6 653 50.4
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 1.1e-143 514.6 618 50.5
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 3.1e-143 513.1 349 74.8
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 4.1e-143 512.7 346 77.2
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 5.3e-143 512.3 344 75.6
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.2e-142 511.1 336 75.9
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.5e-142 510.8 340 77.1
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 2.6e-142 510.0 358 70.9
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 7.7e-142 508.4 344 74.7
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 7.7e-142 508.4 497 58.6
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.0e-141 508.1 340 76.5
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.2e-141 506.9 600 52.3
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 2.9e-141 506.5 347 75.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 6.5e-141 505.4 342 75.7
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 2.5e-140 503.4 520 57.5
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 4.2e-140 502.7 342 76.6
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 5.5e-140 502.3 612 51.3
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.2e-139 501.1 339 74.3
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.9e-139 498.4 640 53.9
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 1.0e-138 498.0 345 73.9
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 6.7e-138 495.4 355 73.0
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 5.7e-137 492.3 561 52.6
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 7.4e-137 491.9 343 73.5
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 7.4e-137 491.9 334 74.6
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 9.7e-137 491.5 344 73.8
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.2e-136 490.3 599 50.4
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 6.3e-136 488.8 344 72.4
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 9.1e-135 485.0 344 72.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 9.1e-135 485.0 341 73.3
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.0e-134 483.8 601 49.9
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 1.3e-133 481.1 490 57.6
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.7e-133 480.7 601 49.8
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 2.5e-132 476.9 348 72.4
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 2.5e-132 476.9 348 72.4
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 3.6e-131 473.0 348 71.8
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 4.7e-131 472.6 338 71.0
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 7.9e-131 471.9 344 69.5
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 9.7e-129 464.9 581 50.9
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 2.8e-128 463.4 600 49.8
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 4.8e-128 462.6 301 77.7
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 6.3e-128 462.2 300 78.0
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 8.2e-128 461.8 341 70.4
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.1e-127 461.5 581 50.9
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 9.1e-127 458.4 346 69.9
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.3e-125 454.5 341 67.2
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.9e-124 450.7 345 68.4
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 2.5e-124 450.3 349 65.6
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.0e-122 444.9 341 69.2
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 2.3e-122 443.7 348 65.5
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 1.5e-121 441.0 328 71.3
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 2.0e-118 430.6 318 67.6
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 7.7e-118 428.7 279 78.9
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 2.2e-117 427.2 344 65.1
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.5e-116 424.5 340 65.9
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.1e-111 408.3 285 75.1
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 7.0e-111 405.6 498 57.2
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 9.1e-111 405.2 285 74.7
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 9.1e-111 405.2 285 74.7
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 5.0e-109 399.4 499 56.5
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 2.7e-102 377.1 270 71.9
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 6.8e-82 309.3 230 73.0
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 3.3e-76 290.4 331 49.5
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 1.6e-75 288.1 175 79.4
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 4.4e-73 280.0 334 48.8
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 7.6e-73 279.3 348 47.1
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 9.9e-65 252.3 277 51.6
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 2.1e-59 234.6 192 66.1
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 3.1e-58 230.7 340 47.4
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 3.7e-51 207.2 185 62.7
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 4.9e-48 196.8 285 42.8
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 8.4e-48 196.1 355 39.2
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 4.2e-47 193.7 156 67.9
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 7.9e-46 189.5 147 68.0
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-45 188.7 289 42.2
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 5.1e-45 186.8 297 39.1
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.5e-36 158.7 136 57.4
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 6.5e-32 143.3 287 39.0
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 1.5e-20 105.5 83 65.1
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 6.9e-18 96.7 76 69.7
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.5e-17 95.5 83 56.6
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.5e-17 95.5 83 56.6
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.6e-17 94.7 83 55.4
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 1.1e-15 89.4 70 61.4
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 5.5e-15 87.0 70 60.0
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 4.7e-14 84.0 69 56.5
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.4e-13 82.4 56 67.9
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.4e-13 82.4 56 67.9
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.3e-13 81.6 239 30.5
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 8.8e-13 79.7 51 82.4
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 7.4e-12 76.6 64 60.9
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 3.5e-09 67.8 80 52.5
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 5.5e-07 60.5 187 32.6
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 6.1e-06 57.0 76 46.1
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 6.1e-06 57.0 76 46.1
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 8.0e-06 56.6 187 32.1
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 8.0e-06 56.6 174 29.3


User provided reference genes

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