Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 4.7e-55 217.6 111 100.0
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 7.1e-43 177.2 109 80.7
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 6.0e-42 174.1 111 79.3
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 1.0e-41 173.3 111 79.3
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 3.3e-40 168.3 111 74.8
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 4.3e-40 167.9 109 76.1
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 5.6e-40 167.5 109 76.1
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 2.8e-39 165.2 111 75.7
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 1.8e-38 162.5 111 72.1
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 5.3e-38 161.0 109 73.4
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 6.9e-38 160.6 111 72.1
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 9.0e-38 160.2 111 70.3
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 9.0e-38 160.2 113 74.3
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 9.0e-38 160.2 109 71.6
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.2e-37 159.8 108 72.2
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.0e-37 159.1 111 71.2
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 4.5e-37 157.9 111 70.3
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 5.8e-37 157.5 111 71.2
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 5.8e-37 157.5 109 71.6
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 1.3e-36 156.4 111 68.5
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.7e-36 156.0 111 73.9
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 2.2e-36 155.6 111 70.3
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 2.2e-36 155.6 111 67.6
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 2.9e-36 155.2 111 71.2
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 2.9e-36 155.2 108 71.3
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 2.9e-36 155.2 105 75.2
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 4.9e-36 154.5 111 69.4
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 4.9e-36 154.5 111 71.2
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 8.4e-36 153.7 112 70.5
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 1.4e-35 152.9 111 68.5
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 1.4e-35 152.9 111 67.6
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 1.9e-35 152.5 111 67.6
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 1.9e-35 152.5 111 67.6
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 2.4e-35 152.1 108 70.4
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.4e-35 151.0 109 68.8
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 7.1e-35 150.6 109 70.6
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 7.1e-35 150.6 105 70.5
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 1.2e-34 149.8 109 65.1
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 1.2e-34 149.8 112 67.0
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 1.2e-34 149.8 111 64.9
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 1.6e-34 149.4 109 67.9
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 1.6e-34 149.4 112 67.0
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 1.6e-34 149.4 111 64.9
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 2.7e-34 148.7 112 67.9
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 3.5e-34 148.3 105 67.6
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 4.6e-34 147.9 114 66.7
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 6.0e-34 147.5 109 63.3
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 7.9e-34 147.1 109 64.2
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 7.9e-34 147.1 109 67.0
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.0e-33 146.7 100 73.0
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.0e-33 146.7 112 66.1
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 1.0e-33 146.7 112 66.1
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 1.3e-33 146.4 111 64.9
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.3e-33 146.4 109 65.1
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 1.8e-33 146.0 111 67.6
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 2.3e-33 145.6 109 68.8
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 3.0e-33 145.2 113 68.1
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 3.0e-33 145.2 113 68.1
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 3.0e-33 145.2 111 64.0
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 3.0e-33 145.2 111 64.9
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 8.7e-33 143.7 109 64.2
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.9e-32 142.5 109 65.1
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 3.3e-32 141.7 105 65.7
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 7.4e-32 140.6 109 62.4
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 1.3e-31 139.8 101 65.3
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 1.6e-31 139.4 112 65.2
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 2.1e-31 139.0 111 63.1
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 2.1e-31 139.0 102 67.6
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 2.8e-31 138.7 111 64.0
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 3.7e-31 138.3 110 64.5
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 8.1e-31 137.1 111 58.6
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 1.4e-30 136.3 113 64.6
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 1.8e-30 136.0 114 61.4
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.4e-30 135.6 130 56.9
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 2.4e-30 135.6 102 66.7
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 2.4e-30 135.6 114 61.4
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 3.1e-30 135.2 113 61.9
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 5.3e-30 134.4 139 55.4
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 9.0e-30 133.7 103 63.1
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.2e-29 133.3 101 66.3
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 1.5e-29 132.9 95 66.3
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 3.4e-29 131.7 103 60.2
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 4.5e-29 131.3 101 65.3
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 5.8e-29 131.0 111 62.2
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 7.6e-29 130.6 102 64.7
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 7.6e-29 130.6 111 60.4
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 9.9e-29 130.2 100 64.0
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 1.3e-28 129.8 99 63.6
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 1.7e-28 129.4 74 85.1
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 2.9e-28 128.6 111 59.5
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 2.9e-28 128.6 111 60.4
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 2.9e-28 128.6 101 62.4
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.1e-27 126.7 102 62.7
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.1e-27 126.7 102 60.8
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.1e-27 126.7 102 60.8
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 1.4e-27 126.3 111 58.6
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.2e-27 125.2 102 59.8
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.2e-27 125.2 102 59.8
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 5.5e-27 124.4 110 56.4
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 5.5e-27 124.4 111 60.4
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 5.5e-27 124.4 111 60.4
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 5.5e-27 124.4 103 56.3
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 7.1e-27 124.0 111 57.7
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 7.1e-27 124.0 111 59.5
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 1.2e-26 123.2 110 60.0
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 1.6e-26 122.9 105 59.0
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 2.1e-26 122.5 100 61.0
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 6.0e-26 120.9 99 62.6
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 7.9e-26 120.6 110 56.4
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 7.9e-26 120.6 73 84.9
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.3e-25 119.8 109 56.9
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 1.3e-25 119.8 109 56.9
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 1.8e-25 119.4 105 57.1
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 5.1e-25 117.9 105 56.2
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 8.7e-25 117.1 105 56.2
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 8.7e-25 117.1 105 56.2
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 8.7e-25 117.1 105 56.2
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 2.5e-24 115.5 111 57.7
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 1.3e-23 113.2 104 55.8
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 1.4e-22 109.8 105 56.2
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 3.1e-22 108.6 100 55.0
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 1.5e-21 106.3 102 55.9
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 1.7e-20 102.8 102 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 1.9e-19 99.4 93 52.7
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 1.9e-19 99.4 63 76.2
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 3.2e-19 98.6 85 61.2
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 2.7e-18 95.5 98 53.1
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 4.6e-18 94.7 86 57.0
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 2.8e-15 85.5 99 46.5
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 5.3e-14 81.3 74 52.7
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 5.0e-12 74.7 66 53.0
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 5.5e-11 71.2 117 42.7
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.6e-10 69.7 73 49.3
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 3.6e-10 68.6 64 51.6
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 1.4e-09 66.6 84 41.7
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 3.9e-09 65.1 74 48.6
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 8.8e-09 63.9 98 38.8


User provided reference genes

Program Settings