Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A815T25 Lonicera japonica HOM05D001345 ORTHO05D001190 4.5e-18 93.6 48 100.0
Dinv05525 Davidia involucrata HOM05D001345 ORTHO05D001190 1.9e-13 78.2 43 90.7
Nitab4.5_0003423g0090 Nicotiana tabacum HOM05D001345 ORTHO05D001190 7.4e-13 76.3 43 88.4
Peaxi162Scf00064g01527 Petunia axillaris HOM05D001345 ORTHO05D001190 7.4e-13 76.3 43 88.4
PGSC0003DMG401029307 Solanum tuberosum HOM05D001345 ORTHO05D001190 7.4e-13 76.3 43 88.4
vmacro04436 Vaccinium macrocarpon HOM05D001345 ORTHO05D001190 9.6e-13 75.9 43 88.4
Cc10_g00030 Coffea canephora HOM05D001345 ORTHO05D001190 1.3e-12 75.5 43 86.0
Duzib128G0510 Durio zibethinus HOM05D001345 ORTHO05D001190 1.3e-12 75.5 43 86.0
Actinidia37898 Actinidia chinensis HOM05D001345 ORTHO05D001190 1.6e-12 75.1 43 86.0
CSS0011724 Camellia sinensis var. sinensis HOM05D001345 ORTHO05D001190 1.6e-12 75.1 43 86.0
Gohir.A06G180700 Gossypium hirsutum HOM05D001345 ORTHO05D001190 1.6e-12 75.1 43 83.7
Gohir.D06G187500 Gossypium hirsutum HOM05D001345 ORTHO05D001190 1.6e-12 75.1 43 83.7
Nitab4.5_0001309g0100 Nicotiana tabacum HOM05D001345 ORTHO05D001190 1.6e-12 75.1 43 86.0
Solyc12g095800.2 Solanum lycopersicum HOM05D001345 ORTHO05D001190 1.6e-12 75.1 43 86.0
Sopen12g031700 Solanum pennellii HOM05D001345 ORTHO05D001190 1.6e-12 75.1 43 86.0
Potri.002G000300 Populus trichocarpa HOM05D001345 ORTHO05D001190 2.8e-12 74.3 43 86.0
Duzib066G0007 Durio zibethinus HOM05D002347 ORTHO05D002969 3.7e-12 73.9 43 83.7
CSS0006725 Camellia sinensis var. sinensis HOM05D001345 ORTHO05D001190 4.8e-12 73.6 43 83.7
Sabra02G0000600 Salix brachista HOM05D001345 ORTHO05D001190 6.2e-12 73.2 43 83.7
GSVIVG01013476001 Vitis vinifera HOM05D001345 ORTHO05D001190 6.2e-12 73.2 43 81.4
CAN.G208.46 Capsicum annuum HOM05D001345 ORTHO05D001190 8.1e-12 72.8 43 86.0
Potri.005G260400 Populus trichocarpa HOM05D001345 ORTHO05D001190 8.1e-12 72.8 43 83.7
Prupe.7G066900 Prunus persica HOM05D001345 ORTHO05D001190 8.1e-12 72.8 43 83.7
Sabra05G0201100 Salix brachista HOM05D001345 ORTHO05D001190 8.1e-12 72.8 43 83.7
Gorai.013G010500 Gossypium raimondii HOM05D001345 ORTHO05D001190 1.1e-11 72.4 43 81.4
CiPaw.08G079800 Carya illinoinensis HOM05D001345 ORTHO05D001190 1.4e-11 72.0 43 81.4
Gorai.010G219800 Gossypium raimondii HOM05D001345 ORTHO05D001190 1.4e-11 72.0 43 81.4
THA.LOC104812029 Tarenaya hassleriana HOM05D001345 ORTHO05D001190 1.4e-11 72.0 42 83.3
TWI56G0941 Tripterygium wilfordii HOM05D001345 ORTHO05D001190 1.4e-11 72.0 43 81.4
COL.COLO4_16222 Corchorus olitorius HOM05D001345 ORTHO05D001190 2.4e-11 71.2 43 76.7
MSTRG.22065 Avicennia marina HOM05D001345 ORTHO05D001190 3.1e-11 70.9 42 83.3
RcHm_v2.0_Chr7g0217951 Rosa chinensis HOM05D001345 ORTHO05D001190 3.1e-11 70.9 43 79.1
Ca_24328_v3 Cicer arietinum L. HOM05D001345 ORTHO05D001190 4.0e-11 70.5 43 79.1
MSTRG.24534 Avicennia marina HOM05D001345 ORTHO05D001190 5.3e-11 70.1 42 81.0
Cfa014180 Carpinus fangiana HOM05D001345 ORTHO05D001190 5.3e-11 70.1 43 79.1
DCAR_013345 Daucus carota HOM05D001345 ORTHO05D001190 5.3e-11 70.1 43 79.1
MD12G1067400 Malus domestica HOM05D001345 ORTHO05D001190 5.3e-11 70.1 43 79.1
MD14G1067500 Malus domestica HOM05D001345 ORTHO05D001190 5.3e-11 70.1 43 79.1
Psat0s4560g0040 Pisum sativum HOM05D001345 ORTHO05D001190 5.3e-11 70.1 43 76.7
MELO3C017077.2 Cucumis melo HOM05D001345 ORTHO05D001190 6.9e-11 69.7 42 81.0
CsaV3_4G037840 Cucumis sativus L. HOM05D001345 ORTHO05D001190 6.9e-11 69.7 43 76.7
Nn6g31512 Nelumbo nucifera HOM05D001345 ORTHO05D001190 6.9e-11 69.7 43 83.7
Sed0023133 Sechium edule HOM05D001345 ORTHO05D001190 6.9e-11 69.7 43 76.7
TPR.G21619 Trifolium pratense HOM05D001345 ORTHO05D001190 6.9e-11 69.7 43 76.7
arahy.Tifrunner.gnm1.ann1.JU3PXC Arachis hypogaea HOM05D001345 ORTHO05D001190 9.0e-11 69.3 43 79.1
arahy.Tifrunner.gnm1.ann1.ZYC0YM Arachis hypogaea HOM05D001345 ORTHO05D001190 9.0e-11 69.3 43 79.1
Cpa.g.sc36.85 Carica papaya HOM05D001345 ORTHO05D001190 9.0e-11 69.3 43 79.1
Haze_22905 Corylus avellana HOM05D001345 ORTHO05D001190 9.0e-11 69.3 45 75.6
Lalb_Chr16g0376201 Lupinus albus HOM05D001345 ORTHO05D001190 9.0e-11 69.3 43 81.4
Phvul.002G055050 Phaseolus vulgaris HOM05D001345 ORTHO05D001190 9.0e-11 69.3 43 76.7
MBI01_g32840_MAGBIO Magnolia biondii HOM05D001345 ORTHO05D001190 1.2e-10 68.9 43 83.7
Manes.05G113900 Manihot esculenta HOM05D001345 ORTHO05D001190 1.2e-10 68.9 43 76.7
Rhsim07G0258500 Rhododendron simsii HOM05D001345 ORTHO05D001190 1.2e-10 68.9 43 81.4
SalBow6G4056 Salvia bowleyana HOM05D001345 ORTHO05D001190 1.2e-10 68.9 42 78.6
Thecc.08G096300 Theobroma cacao HOM05D001345 ORTHO05D001190 1.2e-10 68.9 43 76.7
Ciclev10001330m.g Citrus clementina HOM05D001345 ORTHO05D001190 1.5e-10 68.6 43 79.1
Migut.C00327 Erythranthe guttata HOM05D001345 ORTHO05D001190 1.5e-10 68.6 42 78.6
Medtr5g004570 Medicago truncatula HOM05D001345 ORTHO05D001190 1.5e-10 68.6 43 74.4
TWI12G0120 Tripterygium wilfordii HOM05D001345 ORTHO05D001190 1.5e-10 68.6 43 79.1
VMungo1215G1159 Vigna mungo HOM05D001345 ORTHO05D001190 1.5e-10 68.6 43 76.7
PGR083G2256 Punica granatum HOM05D001345 ORTHO05D001190 2.0e-10 68.2 43 76.7
Atru.chr13.9 Acer truncatum HOM05D001345 ORTHO05D001190 2.6e-10 67.8 43 74.4
HanXRQChr08g0216981 Helianthus annuus HOM05D001345 ORTHO05D001190 2.6e-10 67.8 43 79.1
Lalb_Chr16g0376211 Lupinus albus HOM05D001345 ORTHO05D001190 2.6e-10 67.8 43 79.1
SalBow7G3454 Salvia bowleyana HOM05D001345 ORTHO05D001190 2.6e-10 67.8 42 76.2
Zm00001eb317080 Zea mays HOM05D001345 ORTHO05D001190 2.6e-10 67.8 43 76.7
TAR378G0003 Trochodendron aralioides HOM05D001345 ORTHO05D001190 3.4e-10 67.4 43 79.1
Oeu000726.1 Olea europaea HOM05D001345 ORTHO05D001190 4.5e-10 67.0 43 76.7
Hund05059 Selenicereus undatus HOM05D001345 ORTHO05D001190 4.5e-10 67.0 43 76.7
SGA_v2.0_scaffold25G11029 Striga asiatica HOM05D001345 ORTHO05D001190 4.5e-10 67.0 42 81.0
MSTRG.24886 Avicennia marina HOM05D001345 ORTHO05D001190 5.8e-10 66.6 42 81.0
CiPaw.07G128600 Carya illinoinensis HOM05D001345 ORTHO05D001190 5.8e-10 66.6 43 76.7
Glyma.01G245700 Glycine max HOM05D001345 ORTHO05D001190 7.6e-10 66.2 43 76.7
Lj1g0020049 Lotus japonicus HOM05D001345 ORTHO05D001190 7.6e-10 66.2 43 74.4
Migut.N03004 Erythranthe guttata HOM05D001345 ORTHO05D001190 1.0e-09 65.9 42 81.0
HanXRQChr07g0204421 Helianthus annuus HOM05D001345 ORTHO05D001190 1.0e-09 65.9 43 76.7
Zm00001eb035420 Zea mays HOM05D001345 ORTHO05D001190 1.0e-09 65.9 42 73.8
Os09g0493800 Oryza sativa ssp. japonica HOM05D001345 ORTHO05D001190 1.3e-09 65.5 43 74.4
Oeu014731.2 Olea europaea HOM05D001345 ORTHO05D001190 2.9e-09 64.3 42 76.2
BcaB07g32101 Brassica carinata HOM05D001345 ORTHO05D001190 6.5e-09 63.2 42 81.0
Thhalv10007857m.g Eutrema salsugineum HOM05D001345 ORTHO05D001190 6.5e-09 63.2 42 81.0
Sp1g18750 Schrenkiella parvula HOM05D001345 ORTHO05D001190 6.5e-09 63.2 42 81.0
HPP92_018869 Vanilla planifolia HOM05D001345 ORTHO05D001190 6.5e-09 63.2 43 74.4
FvH4_5g26910 Fragaria vesca HOM05D001345 ORTHO05D001190 8.4e-09 62.8 43 76.7
FAN04G0765 Fragaria x ananassa HOM05D001345 ORTHO05D001190 8.4e-09 62.8 43 76.7
FAN08G2804 Fragaria x ananassa HOM05D001345 ORTHO05D001190 8.4e-09 62.8 43 76.7
FAN13G1933 Fragaria x ananassa HOM05D001345 ORTHO05D001190 8.4e-09 62.8 43 76.7
FAN18G2316 Fragaria x ananassa HOM05D001345 ORTHO05D001190 8.4e-09 62.8 43 76.7
Sc02g0009390 Simmondsia chinensis HOM05D001345 ORTHO05D001190 8.4e-09 62.8 43 69.8
DCAR_009843 Daucus carota HOM05D001345 ORTHO05D001190 1.1e-08 62.4 43 72.1
AL1G34130 Arabidopsis lyrata HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
BcaB03g12835 Brassica carinata HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
BcaC07g39076 Brassica carinata HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
A08p29080 Brassica napus HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
C08p20600 Brassica napus HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
BolC8t49689H Brassica oleracea HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
BolC8t49692H Brassica oleracea HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
BraA08t34843Z Brassica rapa HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
Carub.0001s2054 Capsella rubella HOM05D001345 ORTHO05D001190 1.4e-08 62.0 42 78.6
Ah.11g042670 Amaranthus hybridus HOM05D001345 ORTHO05D001190 1.9e-08 61.6 43 69.8
ECA233G0672 Erigeron canadensis HOM05D001345 ORTHO05D001190 1.9e-08 61.6 42 71.4
Os08g0522600 Oryza sativa ssp. japonica HOM05D001345 ORTHO05D001190 2.5e-08 61.2 42 69.0
Aqoxy5G00906 Aquilegia oxysepala HOM05D001345 ORTHO05D001190 3.2e-08 60.8 43 74.4
AT1G76700 Arabidopsis thaliana HOM05D001345 ORTHO05D001190 3.2e-08 60.8 43 76.7
AUR62035196 Chenopodium quinoa HOM05D001345 ORTHO05D001190 3.2e-08 60.8 43 72.1
AUR62042528 Chenopodium quinoa HOM05D001345 ORTHO05D001190 3.2e-08 60.8 43 72.1
ClCG11G019240 Citrullus lanatus HOM05D001345 ORTHO05D001190 3.2e-08 60.8 39 71.8
unitig_8.g3411 Utricularia gibba HOM05D001345 ORTHO05D001190 4.2e-08 60.5 42 69.0
AT1G21080 Arabidopsis thaliana HOM05D001345 ORTHO05D001190 5.5e-08 60.1 42 76.2
BcaC05g26016 Brassica carinata HOM05D001345 ORTHO05D001190 5.5e-08 60.1 42 78.6
A06p17150 Brassica napus HOM05D001345 ORTHO05D001190 5.5e-08 60.1 42 78.6
C05p19800 Brassica napus HOM05D001345 ORTHO05D001190 5.5e-08 60.1 42 78.6
BolC5t30680H Brassica oleracea HOM05D001345 ORTHO05D001190 5.5e-08 60.1 42 78.6
BraA06t24818Z Brassica rapa HOM05D001345 ORTHO05D001190 5.5e-08 60.1 42 78.6
Aa31LG7G5230 Aethionema arabicum HOM05D001345 ORTHO05D001190 7.1e-08 59.7 42 76.2
Carub.0002s2360 Capsella rubella HOM05D001345 ORTHO05D001190 9.3e-08 59.3 43 72.1
CARHR070240 Cardamine hirsuta HOM05D001345 ORTHO05D001190 9.3e-08 59.3 42 76.2
EL10Ac1g01839 Beta vulgaris HOM05D001345 ORTHO05D001190 1.2e-07 58.9 43 69.8
AL2G36850 Arabidopsis lyrata HOM05D001345 ORTHO05D001190 2.1e-07 58.2 43 72.1
CANSAT25G0067 Cannabis sativa HOM05D001345 ORTHO05D001190 3.5e-07 57.4 42 66.7
CARHR021530 Cardamine hirsuta HOM05D001345 ORTHO05D001190 3.5e-07 57.4 42 73.8
Lsat_1_v5_gn_8_25721 Lactuca sativa HOM05D001345 ORTHO05D001190 3.5e-07 57.4 43 65.1
QL02p016607 Quercus lobata HOM05D001345 ORTHO05D001190 6.0e-07 56.6 43 67.4
Sc02g0004590 Simmondsia chinensis HOM05D001345 ORTHO05D001190 7.9e-07 56.2 42 64.3
Aa31LG4G6780 Aethionema arabicum HOM05D001345 ORTHO05D001190 1.0e-06 55.8 42 71.4
CANSAT21G0481 Cannabis sativa HOM05D001345 ORTHO05D001190 1.0e-06 55.8 42 66.7
CANSAT21G1833 Cannabis sativa HOM05D001345 ORTHO05D001190 1.0e-06 55.8 42 66.7
Sp5g31850 Schrenkiella parvula HOM05D001345 ORTHO05D001190 1.0e-06 55.8 42 71.4
CsaV3_6G031130 Cucumis sativus L. HOM05D001345 ORTHO05D001190 1.3e-06 55.5 42 64.3
Eucgr.F04280 Eucalyptus grandis HOM05D001345 ORTHO05D001190 1.3e-06 55.5 44 63.6
Thhalv10018664m.g Eutrema salsugineum HOM05D001345 ORTHO05D001190 1.3e-06 55.5 42 71.4
MBI06_g27444_MAGBIO Magnolia biondii HOM05D001345 ORTHO05D001190 1.3e-06 55.5 42 64.3
MELO3C008428.2 Cucumis melo HOM05D001345 ORTHO05D001190 1.8e-06 55.1 44 61.4
FvH4_2g15170 Fragaria vesca HOM05D001345 ORTHO05D001190 3.9e-06 53.9 42 61.9
FAN24G1795 Fragaria x ananassa HOM05D001345 ORTHO05D001190 3.9e-06 53.9 42 61.9
Sed0009748 Sechium edule HOM05D001345 ORTHO05D001190 3.9e-06 53.9 42 61.9
Gohir.A13G009100 Gossypium hirsutum HOM05D001345 ORTHO05D001190 5.1e-06 53.5 43 65.1
Nn5g28516 Nelumbo nucifera HOM05D001345 ORTHO05D001190 5.1e-06 53.5 42 64.3
RcHm_v2.0_Chr6g0277831 Rosa chinensis HOM05D001345 ORTHO05D001190 5.1e-06 53.5 42 61.9
BolC6t40118H Brassica oleracea HOM05D001345 ORTHO05D001190 6.7e-06 53.1 42 69.0
BraA07t31763Z Brassica rapa HOM05D001345 ORTHO05D001190 6.7e-06 53.1 42 69.0
Prupe.8G013200 Prunus persica HOM05D001345 ORTHO05D001190 6.7e-06 53.1 42 61.9
TAR381G1421 Trochodendron aralioides HOM05D001345 ORTHO05D001190 6.7e-06 53.1 42 61.9
ATR0820G020 Amborella trichopoda HOM05D001345 ORTHO05D001190 8.7e-06 52.8 43 62.8
Thhalv10019530m.g Eutrema salsugineum HOM05D001345 ORTHO05D001190 8.7e-06 52.8 42 69.0
Potri.005G185800 Populus trichocarpa HOM05D001345 ORTHO05D001190 8.7e-06 52.8 42 59.5
Sabra05G0142000 Salix brachista HOM05D001345 ORTHO05D007039 8.7e-06 52.8 42 59.5


User provided reference genes

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