Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.1e-179 633.3 328 100.0
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.3e-124 450.3 344 70.6
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 2.7e-122 442.6 351 70.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 6.8e-118 427.9 326 70.9
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.6e-117 426.0 330 69.7
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 3.4e-117 425.6 321 70.7
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 7.5e-117 424.5 255 83.5
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.4e-115 420.2 253 83.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.7e-114 416.0 258 82.6
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.0e-113 414.1 325 68.3
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 6.6e-113 411.4 315 69.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.1e-112 410.6 308 69.8
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 3.1e-110 402.5 325 66.8
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.2e-109 400.6 326 67.8
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 4.4e-109 398.7 331 65.3
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 9.9e-109 397.5 328 65.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.2e-108 396.4 323 66.6
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 4.9e-108 395.2 325 65.2
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 4.9e-108 395.2 337 66.5
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 8.4e-108 394.4 330 66.1
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.1e-107 394.0 321 65.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.4e-107 392.9 308 67.9
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 4.1e-107 392.1 258 77.1
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.1e-107 392.1 323 66.9
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 9.2e-107 391.0 307 67.1
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.6e-106 390.2 262 75.6
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.6e-106 390.2 331 64.4
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.1e-106 389.8 319 65.8
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.7e-106 389.4 329 63.5
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 4.6e-106 388.7 258 74.4
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 6.0e-106 388.3 257 75.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 6.0e-106 388.3 292 69.5
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 6.0e-106 388.3 295 71.9
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 7.8e-106 387.9 262 75.2
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.3e-105 387.1 256 76.2
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.7e-105 386.7 333 62.2
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 3.0e-105 386.0 318 66.7
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 5.1e-105 385.2 317 64.0
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 6.6e-105 384.8 336 63.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 6.6e-105 384.8 314 65.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 8.6e-105 384.4 250 76.8
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 8.6e-105 384.4 264 72.7
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-104 384.0 255 74.5
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.5e-104 383.6 256 74.2
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.5e-104 383.6 261 74.7
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.5e-104 383.6 251 76.1
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.9e-104 383.3 304 67.4
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.9e-104 383.3 326 64.1
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.9e-104 383.3 319 64.6
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.5e-104 382.9 252 75.8
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 4.3e-104 382.1 319 64.3
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.6e-104 381.7 259 76.4
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 9.6e-104 380.9 264 70.8
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.6e-103 380.2 279 68.5
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.6e-103 380.2 332 63.3
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.7e-103 378.6 258 73.6
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.1e-102 377.5 258 73.3
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.4e-102 377.1 266 73.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 3.1e-102 375.9 253 73.9
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 3.1e-102 375.9 252 74.2
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 3.1e-102 375.9 287 68.6
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.2e-101 374.0 245 75.1
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.0e-101 373.2 261 73.6
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.0e-101 373.2 261 73.6
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.4e-101 372.5 323 63.5
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 3.4e-101 372.5 259 72.6
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 5.8e-101 371.7 333 60.7
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 8.4e-100 367.9 289 63.0
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.9e-99 366.7 320 62.5
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.9e-99 366.7 347 59.9
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 4.2e-99 365.5 306 64.7
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.7e-97 360.1 252 69.8
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.0e-97 359.4 254 71.7
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 3.0e-97 359.4 273 67.8
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 3.9e-97 359.0 312 62.8
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 5.1e-97 358.6 259 69.5
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.5e-96 357.1 253 71.1
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.3e-96 355.5 322 62.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.3e-96 355.5 255 69.0
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 4.3e-96 355.5 247 70.9
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.6e-95 353.6 300 64.0
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.6e-95 353.6 317 61.5
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.4e-94 349.7 252 69.8
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 2.4e-94 349.7 251 70.1
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 5.3e-94 348.6 307 61.6
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.2e-93 347.4 310 61.3
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.0e-93 346.7 313 59.4
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.6e-93 346.3 295 62.0
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 4.5e-93 345.5 313 59.7
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 4.5e-93 345.5 313 59.7
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.8e-93 345.1 325 57.5
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 7.6e-93 344.7 300 61.0
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 3.0e-89 332.8 286 65.0
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 7.4e-88 328.2 251 66.5
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.8e-86 323.6 251 64.9
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 2.0e-85 320.1 250 64.4
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.9e-84 316.2 254 63.4
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.1e-83 314.3 314 55.1
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 7.6e-77 291.6 202 71.8
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.9e-75 287.0 274 58.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 7.1e-75 285.0 310 52.3
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.6e-71 273.9 260 56.9
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.4e-69 266.2 251 52.6
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 8.5e-68 261.5 269 49.1
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.2e-67 259.2 292 47.3
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.8e-62 243.8 167 72.5
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.7e-58 229.9 241 50.2
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.8e-55 219.2 198 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.0e-52 209.1 221 48.9
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.4e-51 207.6 142 71.1
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.2e-51 205.3 228 53.1
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 2.2e-44 183.7 179 57.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 8.5e-44 181.8 163 63.2
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-43 181.4 112 80.4
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.5e-43 181.0 120 76.7
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 2.5e-43 180.3 223 50.2
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.0e-41 174.9 125 70.4
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.7e-37 160.2 184 53.3
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.0e-36 158.3 169 56.2
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.0e-33 148.3 104 70.2
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.0e-32 144.1 112 63.4
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.2e-29 134.8 104 68.3
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 5.9e-29 132.5 124 54.8
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 7.2e-27 125.6 94 69.1
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.2e-26 124.8 94 66.0
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.8e-26 123.6 75 81.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.3e-23 114.8 250 31.2
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.7e-23 114.4 80 70.0
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 2.2e-23 114.0 71 76.1
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.4e-22 109.4 156 44.9
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 2.7e-21 107.1 91 61.5
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 8.6e-20 102.1 86 59.3
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.8e-17 94.4 56 85.7
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.8e-17 94.4 50 90.0
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.4e-16 90.1 91 52.7
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 8.3e-15 85.5 147 38.8
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.4e-14 82.8 183 30.1
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 7.0e-14 82.4 99 53.5
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.0e-13 80.9 56 73.2
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 8.6e-12 75.5 59 67.8
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-11 75.1 160 31.9
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 2.1e-10 70.9 69 55.1
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 1.8e-09 67.8 78 47.4
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 3.4e-08 63.5 44 56.8


User provided reference genes

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