Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1225T96 Lonicera japonica HOM05D007877 ORTHO05D009957 3.5e-149 531.6 265 100.0
Solyc00g500168.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.7e-143 512.7 263 97.3
Solyc00g500346.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.7e-143 512.7 263 97.3
Solyc00g500357.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.7e-143 512.7 263 97.3
CANSAT16G0008 Cannabis sativa HOM05D007877 ORTHO05D009957 5.5e-142 507.7 263 97.0
RcHm_v2.0_MTg0499111 Rosa chinensis HOM05D007877 ORTHO05D009957 4.3e-139 498.0 263 95.1
CARHR282940 Cardamine hirsuta HOM05D007877 ORTHO05D009957 5.0e-135 484.6 262 92.4
HanXRQChr00c0055g0571431 Helianthus annuus HOM05D007877 ORTHO05D009957 8.5e-135 483.8 250 97.2
HanXRQMTg0579501 Helianthus annuus HOM05D007877 ORTHO05D009957 8.5e-135 483.8 250 97.2
ATMG00570 Arabidopsis thaliana HOM05D007877 ORTHO05D009957 2.7e-133 478.8 262 91.6
DCAR_032450 Daucus carota HOM05D007877 ORTHO05D009957 1.4e-132 476.5 241 98.3
Zm00001eb436210 Zea mays HOM05D007877 ORTHO05D009957 2.3e-132 475.7 260 91.5
Zm00001eb436260 Zea mays HOM05D007877 ORTHO05D009957 2.3e-132 475.7 260 91.5
Zm00001eb436450 Zea mays HOM05D007877 ORTHO05D009957 2.3e-132 475.7 260 91.5
Zm00001eb436490 Zea mays HOM05D007877 ORTHO05D009957 2.3e-132 475.7 260 91.5
Zm00001eb441030 Zea mays HOM05D007877 ORTHO05D009957 2.3e-132 475.7 260 91.5
Aa31csc239G30 Aethionema arabicum HOM05D007877 ORTHO05D009957 5.7e-131 471.1 262 90.1
CsaV3_UNG208000 Cucumis sativus L. HOM05D007877 ORTHO05D009957 9.4e-126 453.8 252 90.1
Lalb_Chr00c29g0408181 Lupinus albus HOM05D007877 ORTHO05D009957 1.1e-123 446.8 243 93.0
Lalb_Chr22g0358751 Lupinus albus HOM05D007877 ORTHO05D009957 1.1e-123 446.8 243 93.0
TPR.G17000 Trifolium pratense HOM05D007877 ORTHO05D009957 1.4e-121 439.9 235 94.0
LjContig00315g0025322 Lotus japonicus HOM05D007877 ORTHO05D009957 2.5e-118 429.1 261 86.6
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 1.3e-111 406.8 247 85.8
Gohir.A01G022475 Gossypium hirsutum HOM05D007877 ORTHO05D009957 2.4e-105 386.0 201 94.5
HanXRQChr00c0234g0572751 Helianthus annuus HOM05D007877 ORTHO05D009957 2.0e-104 382.9 196 97.4
Thhalv10015628m.g Eutrema salsugineum HOM05D007877 ORTHO05D009957 2.1e-101 372.9 248 79.4
SHI55214 Sapria himalayana HOM05D007877 ORTHO05D009957 1.3e-90 337.0 212 82.1
PSO541G3164 Papaver somniferum HOM05D007877 ORTHO05D009957 6.4e-82 308.1 235 67.7
PSO133G0099 Papaver somniferum HOM05D007877 ORTHO05D009957 5.4e-81 305.1 235 67.7
PSO384G0556 Papaver somniferum HOM05D007877 ORTHO05D009957 2.0e-80 303.1 235 67.2
Peaxi162Scf00508g00001 Petunia axillaris HOM05D007877 ORTHO05D009957 3.5e-80 302.4 231 74.5
SEGI_02417 Sequoiadendron giganteum HOM05D007877 ORTHO05D009957 1.2e-75 287.3 217 70.5
Solyc00g500237.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 2.5e-70 269.6 265 63.0
Nitab4.5_0000172g2240 Nicotiana tabacum HOM05D007877 ORTHO05D009957 3.3e-70 269.2 149 89.3
Nitab4.5_0009703g0110 Nicotiana tabacum HOM05D007877 ORTHO05D009957 1.6e-69 266.9 199 75.4
AUR62042354 Chenopodium quinoa HOM05D000743 ORTHO05D000580 5.4e-65 251.9 250 60.4
AUR62043788 Chenopodium quinoa HOM05D000743 ORTHO05D000580 5.4e-65 251.9 250 60.4
arahy.Tifrunner.gnm1.ann1.SK2G41 Arachis hypogaea HOM05D007877 ORTHO05D009957 1.2e-64 250.8 143 90.2
C04p19590 Brassica napus HOM05D007877 ORTHO05D009957 1.5e-62 243.8 148 87.2
HanXRQChr01g0007101 Helianthus annuus HOM05D007877 ORTHO05D009957 5.2e-60 235.3 126 89.7
Lsat_1_v5_gn_2_125060 Lactuca sativa HOM05D007877 ORTHO05D009957 3.4e-59 232.6 123 98.4
BolC4t23493H Brassica oleracea HOM05D007877 ORTHO05D009957 1.7e-55 220.3 124 91.9
TAR371G0168 Trochodendron aralioides HOM05D007877 ORTHO05D009957 3.0e-55 219.5 116 99.1
CAN.G1159.16 Capsicum annuum HOM05D007877 ORTHO05D009957 1.3e-53 214.2 123 91.9
BraSC48t46272Z Brassica rapa HOM05D007877 ORTHO05D009957 3.4e-51 206.1 115 93.0
BraSC177t45764Z Brassica rapa HOM05D007877 ORTHO05D009957 5.8e-51 205.3 115 93.0
Phvul.005G124700 Phaseolus vulgaris HOM05D007877 ORTHO05D009957 6.4e-50 201.8 158 72.2
Lsat_1_v5_gn_9_49261 Lactuca sativa HOM05D007877 ORTHO05D009957 3.2e-49 199.5 107 98.1
Solyc12g035750.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 7.1e-49 198.4 135 74.8
Aqoxy12s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 5.6e-46 188.7 116 87.9
Aqoxy38s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 5.6e-46 188.7 116 87.9
Aqoxy1G02979 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 3.6e-45 186.0 116 87.1
MD15G1309600 Malus domestica HOM05D007877 ORTHO05D009957 1.8e-44 183.7 107 82.2
RhsimMtG0001700 Rhododendron simsii HOM05D007877 ORTHO05D009957 1.3e-39 167.5 90 97.8
RhsimMtG0004900 Rhododendron simsii HOM05D007877 ORTHO05D009957 1.3e-39 167.5 90 97.8
Psat0s1774g0160 Pisum sativum HOM05D007877 ORTHO05D009957 9.6e-38 161.4 98 88.8
unitig_87.g27972 Utricularia gibba HOM05D007877 ORTHO05D009957 1.4e-36 157.5 92 89.1
AUR62026822 Chenopodium quinoa HOM05D000743 ORTHO05D000580 4.0e-36 156.0 88 93.2
Glyma.U026900 Glycine max HOM05D007877 ORTHO05D009957 2.9e-34 149.8 225 44.4
SEGI_25147 Sequoiadendron giganteum HOM05D007877 ORTHO05D009957 2.9e-34 149.8 117 70.1
AUR62043917 Chenopodium quinoa HOM05D000743 ORTHO05D000580 3.5e-32 142.9 128 64.1
Solyc10g062060.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 8.7e-31 138.3 87 77.0
Nitab4.5_0004471g0150 Nicotiana tabacum HOM05D007877 ORTHO05D009957 3.3e-30 136.3 104 75.0
CARHR288300 Cardamine hirsuta HOM05D007877 ORTHO05D009957 2.8e-29 133.3 69 97.1
Solyc05g023970.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 2.8e-29 133.3 124 65.3
BraSC77t46652Z Brassica rapa HOM05D007877 ORTHO05D009957 3.7e-29 132.9 76 92.1
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 5.8e-27 125.6 71 94.4
Solyc10g062070.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.0e-26 124.8 89 76.4
Nitab4.5_0015438g0010 Nicotiana tabacum HOM05D007877 ORTHO05D009957 2.2e-26 123.6 93 67.7
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 1.4e-25 120.9 111 63.1
EL10Ac8g19721 Beta vulgaris HOM05D007877 ORTHO05D009957 7.1e-25 118.6 95 69.5
Solyc04g049250.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 7.1e-25 118.6 122 58.2
Solyc05g023960.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 9.3e-25 118.2 71 78.9
Nn1g10077 Nelumbo nucifera HOM05D007877 ORTHO05D009957 1.2e-24 117.9 63 98.4
Nn1g10099 Nelumbo nucifera HOM05D007877 ORTHO05D009957 1.2e-24 117.9 63 98.4
Ca_26709_v3 Cicer arietinum L. HOM05D010881 ORTHO05D026827 2.1e-24 117.1 61 93.4
CAN.G628.86 Capsicum annuum HOM05D007877 ORTHO05D009957 1.9e-22 110.5 56 92.9
SHI48166 Sapria himalayana HOM05D007877 ORTHO05D009957 4.3e-22 109.4 184 42.4
SHI32359 Sapria himalayana HOM05D007877 ORTHO05D009957 2.4e-20 103.6 99 58.6
Psat0s552g0160 Pisum sativum HOM05D007877 ORTHO05D009957 5.3e-20 102.4 62 83.9
Nitab4.5_0000010g0230 Nicotiana tabacum HOM05D007877 ORTHO05D009957 5.0e-18 95.9 71 73.2
C09p31620 Brassica napus HOM05D007877 ORTHO05D009957 6.1e-16 89.0 53 84.9
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 3.0e-15 86.7 68 73.5
BolC6t36215H Brassica oleracea HOM05D007877 ORTHO05D009957 4.3e-14 82.8 60 75.0
Peaxi162Scf00931g00018 Petunia axillaris HOM05D007877 ORTHO05D009957 4.1e-12 76.3 44 93.2
SHI24736 Sapria himalayana HOM05D007877 ORTHO05D009957 1.2e-11 74.7 48 75.0
ClCG05G014110 Citrullus lanatus HOM05D007877 ORTHO05D009957 2.9e-10 70.1 45 82.2
SalBow1G2595 Salvia bowleyana HOM05D009805 ORTHO05D010994 7.2e-09 65.5 53 67.9
Nitab4.5_0001681g0060 Nicotiana tabacum HOM05D007877 ORTHO05D009957 2.1e-08 63.9 53 67.9


User provided reference genes

Program Settings