Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 2321.2 1197 100.0
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1562.0 1214 70.8
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1406.3 1208 64.6
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1386.7 1220 63.9
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1382.1 1211 64.7
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1296.6 1212 60.9
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1291.6 1226 59.9
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1275.4 1211 59.0
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1260.7 1208 58.2
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1260.0 1216 58.6
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1255.4 1205 58.0
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1255.0 1216 58.4
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1255.0 1216 58.7
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1248.8 1216 57.9
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 0.0e+00 1248.8 1230 58.8
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1246.1 1229 57.7
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1241.9 1208 57.9
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1241.9 1154 60.6
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 0.0e+00 1230.3 1207 58.6
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 0.0e+00 1228.0 1229 58.5
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1226.8 1216 57.6
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1219.5 1151 58.8
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1218.4 1213 56.6
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1217.2 1216 57.0
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1204.5 1216 56.8
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1200.3 1216 56.4
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 0.0e+00 1184.5 1203 56.3
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1179.1 1226 55.4
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 0.0e+00 1178.3 1214 55.9
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 1172.9 1177 57.3
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 0.0e+00 1162.9 1204 54.9
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1161.0 1227 54.4
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 0.0e+00 1158.3 1193 56.0
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1147.5 1210 54.2
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1143.3 1210 54.2
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 0.0e+00 1135.9 1160 55.9
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1132.9 1231 53.1
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1127.5 1208 54.6
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 0.0e+00 1124.4 1107 56.7
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 0.0e+00 1123.6 1107 56.7
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1122.5 1211 52.0
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 0.0e+00 1120.1 1346 49.9
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1113.6 1210 52.4
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1102.0 1206 53.1
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 0.0e+00 1097.4 1107 55.6
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1082.4 1206 53.1
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 0.0e+00 1082.4 1350 49.0
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 0.0e+00 1080.1 1108 54.9
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 0.0e+00 1080.1 1221 52.4
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1079.7 1223 51.8
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1075.5 1218 51.7
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 3.6e-310 1068.5 1110 54.6
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 2.0e-308 1062.8 1112 53.4
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.0e-304 1050.4 1148 53.1
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 3.1e-301 1038.9 1332 48.1
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.3e-295 1018.5 1111 53.1
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 4.0e-293 1011.9 1211 50.8
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 1.3e-291 1006.9 1181 51.1
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 6.4e-291 1004.6 869 64.6
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.5e-287 992.6 1211 49.8
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.4e-285 986.1 1210 49.0
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.4e-285 986.1 1210 49.0
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 6.9e-285 984.6 1191 49.6
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 9.0e-285 984.2 1203 49.2
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 3.4e-284 982.2 1211 49.5
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 1.7e-283 979.9 1204 49.3
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 4.2e-282 975.3 1220 47.4
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 2.1e-281 973.0 1208 48.9
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.7e-281 972.6 1174 50.2
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 7.4e-279 964.5 1048 52.4
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 5.1e-264 915.2 903 59.9
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 9.7e-255 884.4 867 57.1
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 1.2e-249 867.5 1230 44.8
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.7e-243 847.0 1169 46.2
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 1.7e-243 847.0 1186 46.0
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 1.7e-243 847.0 848 56.5
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 2.2e-230 803.5 1226 41.8
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 8.9e-224 781.6 882 52.5
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 2.7e-220 770.0 1272 40.5
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.8e-220 768.5 1019 47.6
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.6e-204 717.6 957 47.0
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 5.1e-203 712.6 607 65.7
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.3e-185 654.8 665 54.1
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 1.4e-181 641.3 1044 40.1
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 3.9e-171 606.7 508 65.2
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 4.6e-164 583.2 1219 34.9
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 3.3e-162 577.0 1157 35.2
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 2.0e-159 567.8 586 57.0
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.6e-153 548.1 567 54.0
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 9.4e-149 532.3 772 43.4
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 6.7e-147 526.2 677 46.7
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.4e-141 508.4 512 58.4
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 4.2e-141 506.9 600 49.0
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 1.1e-133 482.3 610 50.7
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.2e-133 480.3 502 54.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 1.6e-127 461.8 547 50.3
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 1.2e-122 445.7 1195 31.8
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 4.4e-122 443.7 585 45.1
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.2e-103 382.5 405 55.3
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 8.9e-91 339.7 389 50.9
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 7.5e-90 336.7 777 33.2
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 1.9e-72 278.9 268 60.8
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 4.2e-72 277.7 429 42.7
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 6.0e-63 247.3 357 42.6
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 7.4e-61 240.4 934 27.5
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.1e-60 238.8 184 74.5
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.3e-57 229.6 234 57.3
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.5e-56 224.2 244 53.7
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 3.9e-54 218.0 253 51.0
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.8e-51 209.1 265 46.8
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.5e-48 197.6 576 32.5
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 7.9e-47 193.7 168 61.9
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 8.7e-46 190.3 177 61.0
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.2e-44 185.7 252 43.7
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 1.2e-42 179.9 248 44.8
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 1.4e-32 146.4 1155 22.0
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.6e-31 142.9 122 63.1
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.8e-30 137.1 123 57.7
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.1e-27 128.6 121 63.6
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.1e-27 128.3 112 61.6
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 5.3e-27 127.9 112 62.5
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.5e-26 126.3 170 45.9
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.7e-23 115.5 90 66.7
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.6e-23 115.2 340 29.7
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.2e-22 111.3 99 58.6
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.0e-21 109.4 86 64.0
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.3e-20 106.7 66 75.8
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.6e-18 99.8 96 53.1
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 3.5e-18 98.6 83 67.5
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 4.5e-18 98.2 155 39.4
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.9e-16 92.8 77 64.9
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 9.4e-16 90.5 105 46.7
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.2e-15 90.1 60 70.0
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 8.0e-15 87.4 94 55.3
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 1.4e-14 86.7 97 48.5
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 3.3e-13 82.0 107 41.1
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.4e-13 81.6 91 54.9
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.7e-12 79.7 64 68.8
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.7e-12 78.6 166 33.1
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.8e-12 78.2 91 47.3
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.4e-11 76.6 91 47.3
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.5e-10 72.0 58 62.1
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.3e-09 70.1 122 38.5
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.9e-08 66.2 77 51.9
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.2e-08 65.5 72 56.9
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 9.4e-08 63.9 106 41.5
SalBow7G0393 Salvia bowleyana HOM05D022560 ORTHO05D005735 8.0e-07 60.8 65 55.4
SalBow4G2543 Salvia bowleyana HOM05D003568 ORTHO05D004104 1.8e-06 59.7 65 50.8


User provided reference genes

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