Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 8.0e-296 1019.6 497 100.0
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.1e-228 796.6 494 77.7
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 4.2e-228 794.7 493 78.1
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.2e-227 793.1 490 78.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.8e-226 789.3 528 73.7
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.3e-226 788.9 497 78.1
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 6.7e-226 787.3 497 77.5
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 6.7e-226 787.3 493 77.3
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 5.7e-225 784.3 490 77.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.7e-224 782.7 508 75.6
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.7e-224 782.7 493 77.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 3.7e-224 781.6 494 76.3
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.7e-224 781.6 495 75.8
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.8e-224 781.2 491 77.0
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.8e-224 781.2 495 75.6
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 6.3e-224 780.8 490 76.5
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.8e-223 779.2 497 76.9
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.8e-223 779.2 494 76.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 3.4e-222 775.0 485 78.1
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.3e-221 773.1 494 75.1
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 2.2e-221 772.3 495 75.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 6.5e-221 770.8 494 74.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.1e-220 770.0 490 76.1
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.9e-220 769.2 494 75.1
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 2.5e-220 768.8 497 74.2
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 5.5e-220 767.7 490 74.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.1e-219 765.8 494 74.7
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.3e-218 762.3 495 74.7
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.0e-218 761.9 497 73.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 6.7e-218 760.8 493 74.6
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.1e-217 760.0 490 74.3
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.5e-217 759.6 494 74.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.0e-217 759.2 494 73.9
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.0e-217 759.2 494 73.7
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 4.4e-217 758.1 490 73.5
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 9.7e-217 756.9 494 73.5
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 9.7e-217 756.9 491 75.2
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.7e-216 756.1 494 73.3
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.7e-216 756.1 494 73.5
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.2e-216 755.7 495 72.5
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 8.2e-216 753.8 495 72.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 4.1e-215 751.5 494 73.3
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 5.3e-215 751.1 487 73.7
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 5.3e-215 751.1 487 73.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 9.1e-215 750.4 488 74.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.2e-214 750.0 495 72.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.6e-214 749.6 495 72.3
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.6e-214 748.8 496 72.0
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.5e-214 748.0 494 72.5
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 5.9e-214 747.7 419 84.5
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 7.7e-214 747.3 496 72.0
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.0e-213 746.9 489 72.8
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.0e-213 746.9 489 72.8
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.0e-213 746.9 497 70.8
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.7e-213 746.1 405 86.9
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 2.2e-213 745.7 489 72.8
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.9e-213 745.3 494 72.3
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.9e-213 745.3 494 74.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 5.0e-213 744.6 489 72.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 5.0e-213 744.6 489 72.6
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 8.5e-213 743.8 495 72.1
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 8.5e-213 743.8 495 72.1
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.1e-212 743.4 496 71.6
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.9e-212 742.7 489 72.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 7.2e-212 740.7 583 65.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.2e-211 740.0 502 70.9
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.1e-211 739.2 493 72.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 4.7e-211 738.0 486 72.4
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.7e-211 738.0 490 71.8
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 4.7e-211 738.0 528 68.8
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.0e-210 736.9 486 71.8
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.4e-210 736.5 490 71.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 4.0e-210 734.9 490 71.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 5.2e-210 734.6 409 84.8
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 6.7e-210 734.2 494 70.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.8e-210 733.8 500 71.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-209 733.4 490 71.4
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.5e-209 730.7 496 71.2
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 7.5e-209 730.7 491 71.7
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.2e-208 729.2 497 70.8
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 2.2e-208 729.2 495 69.7
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 4.8e-208 728.0 501 70.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 8.2e-208 727.2 391 88.2
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.4e-207 726.5 497 70.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.2e-206 723.4 490 71.2
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.0e-206 722.6 404 82.7
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.5e-206 721.5 497 69.6
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 5.9e-206 721.1 492 70.3
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.7e-203 712.2 430 77.7
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 6.3e-200 701.0 495 67.1
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 5.9e-198 694.5 489 68.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.0e-197 691.4 496 67.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 8.8e-194 680.6 490 67.3
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.3e-189 666.0 484 68.0
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.3e-188 661.8 497 65.4
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 9.5e-188 660.6 496 64.5
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.8e-187 659.1 489 66.1
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.9e-186 654.1 491 64.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.7e-184 649.8 502 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 7.0e-183 644.4 482 65.8
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 2.3e-181 639.4 494 61.7
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 3.9e-181 638.6 343 87.5
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.9e-181 638.6 493 66.7
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 5.6e-180 634.8 491 63.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 4.9e-176 621.7 494 59.7
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.0e-174 616.3 387 77.3
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.0e-173 614.0 398 74.6
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.6e-172 608.2 391 74.4
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.6e-171 605.5 490 59.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.5e-169 600.1 396 73.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.5e-169 600.1 484 61.2
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.4e-167 591.7 493 58.2
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.6e-163 578.9 496 62.3
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.9e-159 566.6 412 67.5
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.9e-159 566.6 498 55.8
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.6e-158 562.0 498 55.4
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.6e-158 562.0 498 55.2
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.2e-153 547.4 296 85.5
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.6e-153 546.2 496 54.6
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 4.2e-151 538.9 414 60.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.8e-147 526.2 337 72.7
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-146 523.5 353 69.1
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.8e-133 480.3 488 49.8
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 2.4e-130 469.9 438 56.4
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.5e-124 449.9 428 52.3
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.6e-118 429.5 225 89.3
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 6.1e-110 402.1 237 80.6
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.2e-104 383.6 409 51.3
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 3.7e-83 313.2 285 55.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.5e-79 301.2 194 71.1
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-77 294.7 157 89.2
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-74 284.3 176 75.0
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.6e-68 263.8 197 68.5
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 6.2e-62 242.7 202 62.4
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.5e-60 235.7 234 56.0
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.3e-51 208.4 191 56.5
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-50 205.3 113 82.3
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 6.6e-48 196.1 107 80.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.6e-38 164.9 88 87.5
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 8.4e-35 152.5 93 76.3
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.1e-34 152.1 194 44.3
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 4.6e-33 146.7 165 48.5
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.7e-32 144.8 204 40.7
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.1e-30 137.9 82 79.3
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.4e-28 130.6 87 74.7
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.6e-23 112.5 67 70.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.4e-21 108.6 263 31.6
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 5.3e-21 106.7 63 79.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.2e-20 105.5 57 77.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 3.4e-20 104.0 65 67.7
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 7.4e-15 86.3 96 49.0
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 9.6e-15 85.9 121 42.1
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-13 81.6 38 89.5
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-10 70.9 81 48.1
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.2e-09 68.9 35 85.7
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 2.5e-07 61.2 69 52.2
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 1.3e-06 58.9 248 25.4
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 1.3e-06 58.9 210 28.1
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 4.8e-06 57.0 33 72.7


User provided reference genes

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