Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1205T45 Lonicera japonica HOM05D000361 ORTHO05D004243 2.9e-38 161.4 81 100.0
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 2.6e-18 95.1 49 98.0
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 2.6e-18 95.1 49 98.0
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 3.4e-18 94.7 49 95.9
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 3.4e-18 94.7 49 95.9
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 5.8e-18 94.0 49 95.9
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 5.8e-18 94.0 49 95.9
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 5.8e-18 94.0 49 95.9
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 5.8e-18 94.0 49 95.9
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 5.8e-18 94.0 49 95.9
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 5.8e-18 94.0 49 95.9
TAR633G1939 Trochodendron aralioides HOM05D000361 ORTHO05D004243 5.8e-18 94.0 49 95.9
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 7.5e-18 93.6 49 95.9
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 9.8e-18 93.2 49 95.9
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 9.8e-18 93.2 49 93.9
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 9.8e-18 93.2 47 97.9
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 9.8e-18 93.2 47 97.9
Atru.chr5.1002 Acer truncatum HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 93.9
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 93.9
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 93.9
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 1.3e-17 92.8 49 93.9
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 93.9
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.3e-17 92.8 78 62.8
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 93.9
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 93.9
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 91.8
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 1.3e-17 92.8 49 91.8
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 1.7e-17 92.4 49 93.9
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 1.7e-17 92.4 49 91.8
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 1.7e-17 92.4 49 93.9
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 2.2e-17 92.0 49 95.9
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 2.2e-17 92.0 49 93.9
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 2.2e-17 92.0 75 68.0
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 2.2e-17 92.0 47 95.7
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 2.2e-17 92.0 47 95.7
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 93.9
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 93.9
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 91.8
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 91.8
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 91.8
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 91.8
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 93.9
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 2.9e-17 91.7 49 93.9
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 91.8
unitig_736.g22937 Utricularia gibba HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 91.8
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 2.9e-17 91.7 49 93.9
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 4.9e-17 90.9 49 91.8
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 4.9e-17 90.9 49 91.8
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 4.9e-17 90.9 49 93.9
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 4.9e-17 90.9 49 93.9
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 4.9e-17 90.9 47 95.7
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 4.9e-17 90.9 47 95.7
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 4.9e-17 90.9 47 95.7
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 4.9e-17 90.9 49 91.8
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 6.4e-17 90.5 47 93.6
CAN.G777.12 Capsicum annuum HOM05D000361 ORTHO05D004243 6.4e-17 90.5 49 89.8
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 6.4e-17 90.5 49 89.8
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 6.4e-17 90.5 49 91.8
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 6.4e-17 90.5 49 91.8
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 6.4e-17 90.5 49 89.8
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 6.4e-17 90.5 49 89.8
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 6.4e-17 90.5 47 93.6
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 8.3e-17 90.1 49 89.8
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 8.3e-17 90.1 49 91.8
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 8.3e-17 90.1 49 87.8
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 8.3e-17 90.1 49 89.8
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.1e-16 89.7 49 91.8
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 1.1e-16 89.7 49 91.8
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 1.1e-16 89.7 49 89.8
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 1.1e-16 89.7 45 97.8
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 1.1e-16 89.7 45 97.8
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.1e-16 89.7 45 97.8
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 1.1e-16 89.7 49 89.8
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 1.1e-16 89.7 49 91.8
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 1.1e-16 89.7 49 89.8
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 1.1e-16 89.7 45 97.8
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.4e-16 89.4 49 83.7
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 1.4e-16 89.4 56 76.8
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 1.4e-16 89.4 49 89.8
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.4e-16 89.4 49 89.8
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.4e-16 89.4 49 89.8
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.4e-16 89.4 49 89.8
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 1.4e-16 89.4 49 89.8
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 1.9e-16 89.0 49 89.8
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.9e-16 89.0 49 87.8
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 2.4e-16 88.6 49 91.8
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 2.4e-16 88.6 49 89.8
SEGI_20894 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 2.4e-16 88.6 81 55.6
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 2.4e-16 88.6 49 91.8
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 2.4e-16 88.6 49 87.8
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 2.4e-16 88.6 47 91.5
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 3.2e-16 88.2 49 87.8
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 3.2e-16 88.2 49 87.8
arahy.Tifrunner.gnm1.ann1.99VT9P Arachis hypogaea HOM05D000361 ORTHO05D004243 3.2e-16 88.2 49 87.8
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 3.2e-16 88.2 49 87.8
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 3.2e-16 88.2 49 87.8
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 3.2e-16 88.2 49 87.8
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 3.2e-16 88.2 49 87.8
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 4.1e-16 87.8 47 91.5
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 4.1e-16 87.8 49 89.8
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 5.4e-16 87.4 49 87.8
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 5.4e-16 87.4 49 83.7
arahy.Tifrunner.gnm1.ann1.Z1FAFN Arachis hypogaea HOM05D000361 ORTHO05D004243 5.4e-16 87.4 49 85.7
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 5.4e-16 87.4 45 95.6
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 5.4e-16 87.4 49 87.8
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 7.0e-16 87.0 49 85.7
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 7.0e-16 87.0 49 85.7
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 7.0e-16 87.0 49 85.7
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 7.0e-16 87.0 49 85.7
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 7.0e-16 87.0 49 85.7
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 7.0e-16 87.0 49 85.7
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 7.0e-16 87.0 49 85.7
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 9.2e-16 86.7 47 89.4
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 9.2e-16 86.7 47 89.4
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 1.2e-15 86.3 49 83.7
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 2.0e-15 85.5 66 68.2
Lalb_Chr15g0078151 Lupinus albus HOM05D000361 ORTHO05D004243 2.0e-15 85.5 45 91.1
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 2.0e-15 85.5 49 83.7
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 2.7e-15 85.1 49 85.7
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.7e-15 85.1 46 89.1
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 4.6e-15 84.3 48 87.5
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 4.6e-15 84.3 48 87.5
arahy.Tifrunner.gnm1.ann1.3FW809 Arachis hypogaea HOM05D000361 ORTHO05D004243 6.0e-15 84.0 48 85.4
Gorai.008G140000 Gossypium raimondii HOM05D000361 ORTHO05D004243 3.0e-14 81.6 50 78.0
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 6.6e-14 80.5 47 78.7
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 1.1e-13 79.7 47 80.9
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 3.3e-13 78.2 46 80.4
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 7.3e-13 77.0 72 55.6
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 7.3e-13 77.0 49 73.5
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 7.3e-13 77.0 49 73.5
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 9.5e-13 76.6 46 78.3
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 6.2e-12 73.9 42 90.5
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 2.3e-11 72.0 62 64.5
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 1.5e-10 69.3 45 73.3
PRCOL_00004542 Prasinoderma coloniale HOM05D000361 ORTHO05D004243 1.3e-09 66.2 47 61.7
arahy.Tifrunner.gnm1.ann1.1JN5P4 Arachis hypogaea HOM05D000361 ORTHO05D004243 8.3e-09 63.5 32 93.8
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 5.4e-08 60.8 42 66.7
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 1.2e-07 59.7 30 96.7
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 3.5e-07 58.2 32 90.6
DCAR_005759 Daucus carota HOM05D000361 ORTHO05D004243 7.8e-07 57.0 33 84.8
MD11G1314200 Malus domestica HOM05D000361 ORTHO05D004243 1.7e-06 55.8 32 84.4
MCO10G287 Micromonas commoda HOM05D000361 ORTHO05D004243 5.1e-06 54.3 42 64.3


User provided reference genes

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