Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 0.0e+00 1500.3 885 100.0
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.7e-309 1065.8 865 75.7
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 6.0e-302 1040.8 908 74.9
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.9e-301 1038.1 889 71.2
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 3.3e-300 1035.0 891 75.0
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-298 1030.0 888 66.9
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-297 1025.8 886 71.1
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-291 1006.5 879 70.2
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 9.9e-289 996.9 891 72.3
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 3.2e-279 965.3 859 68.6
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 5.6e-276 954.5 857 70.4
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 5.6e-276 954.5 857 70.4
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-273 945.7 903 66.8
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-269 933.7 901 66.3
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 3.7e-267 925.2 884 66.0
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 7.7e-265 917.5 856 64.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-240 836.6 809 61.6
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 2.9e-240 835.9 902 59.8
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 3.8e-240 835.5 892 56.6
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 3.7e-227 792.3 902 57.1
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.8e-226 790.0 902 54.2
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 6.6e-224 781.6 898 59.6
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.2e-222 777.3 874 54.7
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 4.7e-222 775.4 895 56.1
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 5.2e-221 771.9 820 58.2
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.8e-218 763.5 858 55.9
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 2.0e-217 760.0 851 53.7
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 3.5e-217 759.2 894 53.9
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.3e-216 757.3 901 55.5
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 2.5e-215 753.1 911 53.1
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.1e-214 750.0 921 53.6
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 1.0e-213 747.7 895 57.0
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.8e-213 746.9 836 58.0
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.9e-213 744.6 898 55.9
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.2e-209 734.2 859 53.6
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.0e-208 731.1 912 51.4
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.3e-207 726.1 905 52.2
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 9.5e-207 724.5 767 62.8
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 7.5e-204 714.9 886 54.5
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.7e-203 713.8 868 55.4
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.9e-203 712.2 893 56.1
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.1e-202 711.1 912 54.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.9e-202 710.3 888 56.6
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.4e-202 709.9 892 51.3
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.4e-202 708.8 866 52.0
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.5e-201 706.1 892 51.2
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.0e-200 704.5 799 59.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.0e-200 704.5 892 51.2
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 3.0e-200 703.0 882 51.1
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.1e-200 702.2 908 51.0
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.1e-199 701.0 892 50.9
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 4.0e-197 692.6 934 49.8
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.7e-195 687.2 801 53.4
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.9e-195 686.4 910 55.4
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 9.2e-194 681.4 901 52.8
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.2e-193 681.0 868 50.1
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.1e-193 680.2 905 50.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 4.6e-193 679.1 905 50.1
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 4.6e-193 679.1 907 51.7
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 6.0e-193 678.7 877 51.3
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 5.1e-192 675.6 901 48.9
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.1e-191 674.5 918 51.3
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 5.6e-191 672.2 960 48.0
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.6e-190 670.6 867 54.2
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 4.0e-189 666.0 878 50.0
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 9.9e-188 661.4 904 48.6
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.4e-186 657.5 897 47.5
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 5.4e-186 655.6 866 53.2
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 2.3e-184 650.2 907 49.1
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.3e-183 646.4 921 48.3
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.6e-182 644.0 859 51.2
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 9.0e-181 638.3 871 51.2
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.1e-178 631.3 970 48.2
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 4.2e-178 629.4 870 52.6
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 9.3e-178 628.2 894 50.8
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 3.0e-176 623.2 926 46.1
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.1e-175 621.3 913 50.6
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 8.1e-174 615.1 909 52.6
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.1e-173 614.8 888 54.5
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 4.5e-172 609.4 877 50.9
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 7.6e-172 608.6 866 51.8
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 4.9e-171 605.9 895 51.3
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 8.4e-171 605.1 895 51.4
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 8.4e-171 605.1 913 48.2
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 4.2e-170 602.8 888 51.2
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 4.2e-170 602.8 914 50.8
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.0e-168 598.2 917 51.3
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 1.0e-168 598.2 936 48.1
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.3e-168 597.8 896 51.1
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.8e-168 597.4 919 50.6
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 3.9e-168 596.3 859 53.2
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.9e-167 594.0 743 53.4
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 4.3e-167 592.8 899 48.3
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 7.4e-167 592.0 889 47.2
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.5e-164 584.3 910 48.2
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 2.0e-164 583.9 911 49.1
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 3.4e-164 583.2 875 50.3
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.1e-162 578.2 901 50.5
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.6e-161 574.3 946 47.4
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 9.6e-159 565.1 907 49.9
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 2.9e-155 553.5 767 49.4
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.5e-155 552.4 903 47.8
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 6.7e-152 542.3 831 44.9
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.3e-142 511.5 734 53.0
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 9.1e-141 505.4 875 40.8
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 7.2e-138 495.7 906 41.4
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 3.6e-137 493.4 904 39.5
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 8.8e-136 488.8 876 45.8
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 4.5e-132 476.5 438 60.0
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 2.8e-126 457.2 382 70.7
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.7e-118 431.4 901 38.1
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 6.3e-118 429.5 849 44.4
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 5.0e-115 419.9 415 55.7
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.5e-111 408.3 907 40.5
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.6e-97 360.5 528 48.9
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.4e-93 348.6 862 37.6
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 1.7e-83 315.1 419 49.4
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 3.3e-82 310.8 647 40.8
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.5e-82 309.3 420 47.6
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.2e-77 294.3 400 51.2
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 7.1e-77 293.1 375 51.5
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 6.0e-76 290.0 630 37.0
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 2.4e-72 278.1 539 41.9
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.6e-68 263.8 246 55.7
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.6e-65 254.2 520 47.7
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.9e-61 241.9 202 67.3
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.9e-53 215.3 179 63.1
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-47 194.9 500 41.2
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 7.6e-47 193.4 500 41.6
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.1e-45 189.5 183 55.7
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-40 171.8 468 34.8
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 4.1e-40 171.0 213 47.9
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 4.5e-39 167.5 881 30.0
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.5e-37 160.6 632 32.1
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.3e-34 151.0 554 35.4
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 7.4e-34 150.2 170 53.5
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 4.5e-31 141.0 379 35.1
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.0e-27 129.8 229 36.2
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.5e-26 125.9 160 52.5
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.0e-26 125.6 103 62.1
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.7e-26 124.0 161 47.8
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 7.4e-26 123.6 248 40.3
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 6.9e-24 117.1 97 59.8
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 6.9e-24 117.1 97 59.8
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 2.2e-22 112.1 617 25.3
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 5.0e-22 110.9 225 47.6
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 7.7e-15 87.0 152 38.8
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 6.5e-14 84.0 148 39.2
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.1e-13 83.2 109 44.0
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.5e-13 82.8 254 31.1
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-13 81.6 185 36.2
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 4.2e-13 81.3 42 92.9
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 6.1e-12 77.4 65 64.6
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.0e-12 77.0 151 35.1
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.0e-12 77.0 151 35.1
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.0e-12 77.0 151 35.1
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-11 76.6 97 48.5
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-11 75.1 152 36.2
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-11 75.1 152 36.2
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 2.8e-09 68.6 46 69.6
arahy.Tifrunner.gnm1.ann1.XCJ58K Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-07 63.2 376 33.8
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.6e-07 62.8 42 71.4
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 2.0e-07 62.4 86 41.9
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-06 58.5 45 71.1
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 2.9e-06 58.5 40 70.0


User provided reference genes

Program Settings