Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 0.0e+00 1219.1 610 100.0
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 6.2e-266 920.6 611 76.8
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.4e-262 909.4 605 76.2
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 9.3e-262 906.7 612 75.7
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 8.4e-255 883.6 611 74.5
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 8.2e-242 840.5 616 71.1
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 5.7e-235 817.8 604 68.0
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 1.7e-234 816.2 604 67.9
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 1.1e-233 813.5 610 68.7
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 1.2e-216 756.9 621 64.6
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 1.4e-201 706.8 605 61.0
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 2.4e-201 706.1 605 61.0
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.6e-192 676.8 605 58.3
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 3.1e-188 662.5 605 57.2
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 1.9e-185 653.3 522 64.8
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 4.6e-184 648.7 607 55.8
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 6.0e-184 648.3 608 57.6
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 5.1e-183 645.2 605 56.4
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 7.3e-182 641.3 615 55.9
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.4e-177 627.1 605 55.9
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.9e-177 626.7 626 54.3
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 7.8e-176 621.3 608 55.3
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 3.3e-174 615.9 606 54.5
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 2.8e-173 612.8 605 53.9
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 3.6e-173 612.5 683 51.4
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 2.4e-172 609.8 608 55.1
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 2.9e-170 602.8 611 53.7
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 1.9e-169 600.1 610 54.1
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 3.9e-167 592.4 610 53.3
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 3.3e-166 589.3 577 54.6
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 1.6e-165 587.0 618 52.1
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 1.3e-162 577.4 606 51.8
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.9e-162 576.2 626 51.9
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 3.8e-162 575.9 605 50.6
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 3.5e-160 569.3 609 52.5
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 2.8e-157 559.7 651 48.5
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.1e-156 557.8 623 49.6
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 4.5e-155 552.4 611 49.6
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 4.2e-153 545.8 614 49.8
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 4.2e-153 545.8 614 49.8
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 1.2e-152 544.3 614 49.7
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 6.0e-152 542.0 568 51.4
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 6.7e-151 538.5 627 49.0
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 2.8e-149 533.1 613 49.6
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 3.1e-148 529.6 616 49.4
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 3.1e-148 529.6 617 49.3
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 1.0e-146 524.6 624 47.1
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 4.6e-144 515.8 624 47.9
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.8e-143 513.8 608 48.0
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 3.9e-143 512.7 368 69.3
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.1e-142 511.1 617 48.9
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 9.6e-142 508.1 481 59.0
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.6e-141 507.3 613 48.8
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 2.8e-141 506.5 613 49.1
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 5.3e-140 502.3 622 46.3
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.6e-139 500.0 625 47.8
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.0e-138 498.0 612 46.7
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.9e-138 496.5 619 45.7
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 3.8e-138 496.1 628 48.1
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.1e-137 494.6 621 46.5
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 1.9e-137 493.8 628 47.9
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 9.3e-137 491.5 635 46.0
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 2.1e-136 490.3 620 46.3
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 1.0e-135 488.0 630 47.0
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 3.9e-135 486.1 636 44.2
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.5e-134 484.2 610 45.1
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 7.4e-134 481.9 318 75.8
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 1.1e-132 478.0 620 44.7
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.5e-131 474.2 626 45.7
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 4.5e-131 472.6 623 44.6
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 2.9e-130 469.9 646 44.7
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 8.5e-130 468.4 626 45.8
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 5.5e-129 465.7 619 44.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.4e-127 461.1 643 44.3
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 1.8e-127 460.7 716 41.1
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 1.1e-118 431.4 485 51.1
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 5.2e-111 406.0 612 41.7
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.1e-108 398.3 490 45.9
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.8e-108 397.5 391 55.8
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.0e-106 391.7 398 55.0
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 1.7e-106 391.0 484 48.6
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 6.1e-104 382.5 651 39.3
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 8.3e-93 345.5 365 53.4
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.3e-90 337.4 408 47.8
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 1.1e-89 335.1 224 77.7
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.2e-86 325.1 316 55.4
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 3.2e-84 317.0 234 69.2
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 1.2e-83 315.1 278 58.3
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 8.9e-79 298.9 292 54.1
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 2.9e-77 293.9 277 57.8
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.9e-61 240.7 276 51.8
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 6.4e-53 213.0 224 51.3
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 2.4e-52 211.1 323 39.3
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 8.7e-50 202.6 551 29.2
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.1e-47 195.7 180 61.7
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 1.7e-45 188.3 276 43.5
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 8.4e-45 186.0 612 28.9
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 4.2e-44 183.7 331 36.6
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 3.3e-41 174.1 417 32.1
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 6.4e-37 159.8 132 57.6
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 7.1e-36 156.4 128 57.0
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 1.7e-29 135.2 237 38.0
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.2e-29 134.8 288 32.3
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 1.4e-28 132.1 151 51.7
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.6e-27 128.6 132 50.8
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 1.1e-25 122.5 267 34.5
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.6e-24 118.6 168 40.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.1e-24 118.2 116 50.0
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 8.2e-24 116.3 119 49.6
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.1e-23 115.9 160 41.2
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 4.1e-23 114.0 393 28.0
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 4.5e-22 110.5 118 50.8
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 2.9e-21 107.8 169 40.2
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.8e-18 98.6 101 47.5
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 6.3e-16 90.1 122 45.9
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 2.4e-15 88.2 488 23.2
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 8.5e-13 79.7 200 32.0
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.4e-12 79.0 113 41.6
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 1.0e-10 72.8 86 47.7
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 3.1e-07 61.2 87 42.5
Psat0s5291g0040 Pisum sativum HOM05D006061 ORTHO05D007450 1.2e-06 59.3 71 47.9


User provided reference genes

Program Settings