Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0022770 Lotus japonicus HOM05D007390 ORTHO05D009114 3.4e-102 375.6 183 100.0
Lj6g0008328 Lotus japonicus HOM05D007390 ORTHO05D009114 5.5e-68 261.9 176 75.6
Glyma.15G202500 Glycine max HOM05D007390 ORTHO05D009114 3.2e-60 236.1 173 68.8
Lalb_Chr15g0083781 Lupinus albus HOM05D007390 ORTHO05D009114 1.2e-59 234.2 176 67.6
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 1.6e-56 223.8 175 62.3
arahy.Tifrunner.gnm1.ann1.885AEG Arachis hypogaea HOM05D007390 ORTHO05D009114 3.7e-56 222.6 195 59.0
Phvul.009G209400 Phaseolus vulgaris HOM05D007390 ORTHO05D009114 4.8e-56 222.2 173 65.3
TPR.G1694 Trifolium pratense HOM05D007390 ORTHO05D009114 5.3e-55 218.8 176 61.9
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 1.7e-53 213.8 207 52.7
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 6.5e-53 211.8 204 52.5
Psat1g149640 Pisum sativum HOM05D007390 ORTHO05D009114 2.5e-52 209.9 168 61.9
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 9.4e-52 208.0 207 52.2
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 3.3e-49 199.5 209 50.2
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 3.3e-49 199.5 200 50.5
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 2.2e-48 196.8 199 51.8
Ca_02001_v3 Cicer arietinum L. HOM05D007390 ORTHO05D009114 4.8e-48 195.7 154 63.0
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 4.8e-48 195.7 198 52.5
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 5.3e-47 192.2 207 46.9
FAN11G1706 Fragaria x ananassa HOM05D007390 ORTHO05D009114 5.3e-47 192.2 191 52.9
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 6.9e-47 191.8 194 50.5
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 1.2e-46 191.0 203 49.3
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 2.0e-46 190.3 206 49.5
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 3.4e-46 189.5 206 50.5
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 4.5e-46 189.1 194 49.5
AUR62017120 Chenopodium quinoa HOM05D007390 ORTHO05D009114 1.0e-45 188.0 203 47.8
QL08p003914 Quercus lobata HOM05D007390 ORTHO05D009114 1.0e-45 188.0 171 56.7
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 2.2e-45 186.8 207 49.8
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 2.9e-45 186.4 199 49.2
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 6.5e-45 185.3 207 50.7
Prupe.6G024500 Prunus persica HOM05D007390 ORTHO05D009114 1.4e-44 184.1 176 55.7
TWI39G0225 Tripterygium wilfordii HOM05D007390 ORTHO05D009114 5.5e-44 182.2 172 56.4
FAN11G2668 Fragaria x ananassa HOM05D007390 ORTHO05D009114 1.2e-43 181.0 176 54.0
FvH4_3g42930 Fragaria vesca HOM05D007390 ORTHO05D009114 1.6e-43 180.6 176 53.4
MD03G1028500 Malus domestica HOM05D007390 ORTHO05D009114 2.7e-43 179.9 176 54.0
Psat6g031600 Pisum sativum HOM05D007390 ORTHO05D009114 4.7e-43 179.1 134 66.4
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 6.1e-43 178.7 202 48.5
FAN21G2513 Fragaria x ananassa HOM05D007390 ORTHO05D009114 6.1e-43 178.7 176 53.4
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 7.9e-43 178.3 201 46.3
Potri.001G368700 Populus trichocarpa HOM05D007390 ORTHO05D009114 7.9e-43 178.3 162 57.4
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 7.9e-43 178.3 207 47.8
CSS0024662 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 1.0e-42 177.9 174 52.9
CSS0045615 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 1.0e-42 177.9 174 52.9
Thecc.07G011700 Theobroma cacao HOM05D007390 ORTHO05D009114 3.9e-42 176.0 171 53.8
RcHm_v2.0_Chr5g0076971 Rosa chinensis HOM05D007390 ORTHO05D009114 5.2e-42 175.6 177 52.5
SGA_v2.0_scaffold13G06360 Striga asiatica HOM05D007390 ORTHO05D009114 8.8e-42 174.9 163 54.6
Cpa.g.c43812 Carica papaya HOM05D007390 ORTHO05D009114 1.1e-41 174.5 155 57.4
Ciclev10007298m.g Citrus clementina HOM05D007390 ORTHO05D009114 2.0e-41 173.7 151 60.9
CAN.G354.45 Capsicum annuum HOM05D007390 ORTHO05D009114 2.6e-41 173.3 210 45.7
Haze_09837 Corylus avellana HOM05D007390 ORTHO05D009114 4.4e-41 172.6 154 57.8
Nn5g29749 Nelumbo nucifera HOM05D007390 ORTHO05D009114 9.7e-41 171.4 170 52.9
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 1.7e-40 170.6 201 47.8
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 1.7e-40 170.6 201 47.8
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 1.7e-40 170.6 201 47.8
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 2.2e-40 170.2 199 48.7
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 2.2e-40 170.2 201 47.8
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 3.7e-40 169.5 196 49.0
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 3.7e-40 169.5 175 52.0
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 1.4e-39 167.5 195 47.7
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 1.8e-39 167.2 199 45.7
BcaB08g35947 Brassica carinata HOM05D007390 ORTHO05D009114 1.8e-39 167.2 194 49.0
TAR626G0036 Trochodendron aralioides HOM05D007390 ORTHO05D009114 2.4e-39 166.8 154 57.8
Manes.15G058900 Manihot esculenta HOM05D007390 ORTHO05D009114 3.1e-39 166.4 172 51.2
THA.LOC104811670 Tarenaya hassleriana HOM05D007390 ORTHO05D009114 9.1e-39 164.9 170 52.4
Aqoxy4G00642 Aquilegia oxysepala HOM05D007390 ORTHO05D009114 1.2e-38 164.5 163 50.3
CiPaw.11G204600 Carya illinoinensis HOM05D007390 ORTHO05D009114 2.6e-38 163.3 160 55.6
Hund07420 Selenicereus undatus HOM05D007390 ORTHO05D009114 2.6e-38 163.3 156 53.2
Migut.F01991 Erythranthe guttata HOM05D007390 ORTHO05D009114 1.3e-37 161.0 162 50.0
BcaB08g35953 Brassica carinata HOM05D007390 ORTHO05D009114 1.7e-37 160.6 197 47.2
Carub.0008s1619 Capsella rubella HOM05D007390 ORTHO05D009114 2.2e-37 160.2 171 52.0
Dinv40864 Davidia involucrata HOM05D007390 ORTHO05D009114 2.9e-37 159.8 178 49.4
Nitab4.5_0000163g0140 Nicotiana tabacum HOM05D007390 ORTHO05D009114 8.5e-37 158.3 171 47.4
Sopen12g007640 Solanum pennellii HOM05D007390 ORTHO05D009114 1.1e-36 157.9 164 49.4
PGR031G0714 Punica granatum HOM05D007390 ORTHO05D009114 5.5e-36 155.6 160 52.5
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 7.2e-36 155.2 155 52.3
CARHR269210 Cardamine hirsuta HOM05D007390 ORTHO05D009114 3.6e-35 152.9 171 46.8
Nitab4.5_0000756g0010 Nicotiana tabacum HOM05D007390 ORTHO05D009114 3.6e-35 152.9 155 49.7
Ca_02420_v3 Cicer arietinum L. HOM05D007390 ORTHO05D009114 2.3e-34 150.2 127 60.6
Cc05_g15030 Coffea canephora HOM05D007390 ORTHO05D009114 3.0e-34 149.8 172 45.3
Gorai.002G101000 Gossypium raimondii HOM05D007390 ORTHO05D009114 5.9e-30 135.6 135 51.9
Gohir.A01G092200 Gossypium hirsutum HOM05D007390 ORTHO05D009114 7.7e-30 135.2 135 51.9
MBI18_g16977_MAGBIO Magnolia biondii HOM05D007390 ORTHO05D009114 7.7e-30 135.2 121 56.2
ATR0691G117 Amborella trichopoda HOM05D007390 ORTHO05D009114 2.9e-29 133.3 160 45.6
PGSC0003DMG400029810 Solanum tuberosum HOM05D007390 ORTHO05D009114 1.1e-28 131.3 148 45.3
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 2.1e-27 127.1 182 40.7
Lsat_1_v5_gn_5_144140 Lactuca sativa HOM05D007390 ORTHO05D009114 2.8e-19 100.1 93 51.6
Lsat_1_v5_gn_3_61021 Lactuca sativa HOM05D007390 ORTHO05D009114 1.8e-18 97.4 93 50.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.6e-14 84.3 213 30.0
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.1e-11 73.9 179 28.5
Lalb_Chr03g0043751 Lupinus albus HOM05D006931 ORTHO05D008782 2.8e-11 73.6 146 30.8
Thhalv10012614m.g Eutrema salsugineum HOM05D007390 ORTHO05D009114 3.6e-11 73.2 47 70.2
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 3.0e-10 70.1 199 28.1
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 4.0e-10 69.7 180 27.2
Zm00001eb049980 Zea mays HOM05D007390 ORTHO05D009114 5.2e-10 69.3 159 30.2
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 8.9e-10 68.6 180 27.8
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 8.9e-10 68.6 180 26.1
Psat7g206160 Pisum sativum HOM05D007675 ORTHO05D009699 1.5e-09 67.8 131 37.4
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 2.6e-09 67.0 174 28.2
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 4.4e-09 66.2 167 29.9
AUR62014645 Chenopodium quinoa HOM05D007291 ORTHO05D009038 4.4e-09 66.2 188 28.7
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 4.4e-09 66.2 174 28.2
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 9.8e-09 65.1 168 26.8
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 9.8e-09 65.1 175 28.0
arahy.Tifrunner.gnm1.ann1.F8FJH0 Arachis hypogaea HOM05D007675 ORTHO05D009699 1.3e-08 64.7 144 35.4
arahy.Tifrunner.gnm1.ann1.C1QAGZ Arachis hypogaea HOM05D007675 ORTHO05D009699 1.7e-08 64.3 144 34.0
AUR62012554 Chenopodium quinoa HOM05D007291 ORTHO05D009038 3.7e-08 63.2 188 28.7
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 3.7e-08 63.2 181 24.9
Hma1.2p1_0749F.1_g212590 Hydrangea macrophylla HOM05D002890 ORTHO05D009847 3.7e-08 63.2 189 28.6
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 4.9e-08 62.8 163 25.2
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 4.9e-08 62.8 127 37.0
Psat6g221080 Pisum sativum HOM05D007675 ORTHO05D009699 4.9e-08 62.8 123 34.1
Cfa014232 Carpinus fangiana HOM05D006931 ORTHO05D008782 8.3e-08 62.0 187 25.1
Medtr4g068800 Medicago truncatula HOM05D007675 ORTHO05D009699 8.3e-08 62.0 127 37.0
FvH4_5g33100 Fragaria vesca HOM05D007291 ORTHO05D009038 1.1e-07 61.6 186 26.9
FAN08G0725 Fragaria x ananassa HOM05D007291 ORTHO05D009038 1.1e-07 61.6 186 26.9
Ah.14g088580 Amaranthus hybridus HOM05D007291 ORTHO05D009038 1.4e-07 61.2 196 27.0
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.8e-07 60.8 188 28.2
RcHm_v2.0_Chr6g0245191 Rosa chinensis HOM05D007675 ORTHO05D009699 1.8e-07 60.8 122 32.0
SalBow1G1723 Salvia bowleyana HOM05D007291 ORTHO05D009038 1.8e-07 60.8 203 25.1
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 2.4e-07 60.5 187 27.8
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 3.2e-07 60.1 175 25.7
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.2e-07 60.1 172 23.8
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 4.1e-07 59.7 133 33.1
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 5.4e-07 59.3 162 27.8
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 5.4e-07 59.3 177 24.9
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 9.2e-07 58.5 176 27.3
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 9.2e-07 58.5 176 26.1
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 1.2e-06 58.2 192 27.1
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 1.2e-06 58.2 162 26.5
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 1.2e-06 58.2 170 27.6
TAR623G1478 Trochodendron aralioides HOM05D007675 ORTHO05D009699 1.2e-06 58.2 145 32.4
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 1.6e-06 57.8 147 29.3
CDE04G1316 Ceratophyllum demersum HOM05D007675 ORTHO05D009699 1.6e-06 57.8 142 31.0
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 1.6e-06 57.8 205 25.4
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 2.0e-06 57.4 185 24.9
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 2.0e-06 57.4 186 25.8
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 2.7e-06 57.0 184 25.0
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 3.5e-06 56.6 175 26.9
Sed0024711 Sechium edule HOM05D007291 ORTHO05D009038 3.5e-06 56.6 180 25.0
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 4.6e-06 56.2 175 26.9
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 4.6e-06 56.2 175 26.9
Lj3g0001256 Lotus japonicus HOM05D007675 ORTHO05D009699 4.6e-06 56.2 142 28.9
Potri.004G090800 Populus trichocarpa HOM05D007291 ORTHO05D009038 4.6e-06 56.2 215 24.7
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 4.6e-06 56.2 163 27.6
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 5.9e-06 55.8 167 25.7
Gohir.D06G154100 Gossypium hirsutum HOM05D002890 ORTHO05D009847 5.9e-06 55.8 164 26.2
Nn5g29449 Nelumbo nucifera HOM05D007675 ORTHO05D009699 5.9e-06 55.8 148 29.1
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 5.9e-06 55.8 205 25.4
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 7.8e-06 55.5 171 27.5
AT1G66345 Arabidopsis thaliana HOM05D007291 ORTHO05D009038 7.8e-06 55.5 174 27.6
Gorai.010G180200 Gossypium raimondii HOM05D002890 ORTHO05D009847 7.8e-06 55.5 163 26.4
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 7.8e-06 55.5 169 26.6
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 7.8e-06 55.5 212 23.6


User provided reference genes

Program Settings