Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 3.0e-232 808.1 403 100.0
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 3.7e-214 748.0 405 92.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 6.2e-214 747.3 403 91.8
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 9.0e-213 743.4 401 90.3
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.2e-212 743.0 403 90.3
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 5.8e-212 740.7 403 91.6
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.7e-211 739.2 404 90.6
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.2e-211 738.8 407 91.6
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 8.4e-211 736.9 405 91.6
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 9.3e-210 733.4 406 89.9
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.1e-209 732.3 403 90.8
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 4.6e-209 731.1 409 90.2
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 6.0e-209 730.7 405 90.1
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.5e-207 726.1 403 89.6
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.3e-207 724.9 405 89.9
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 5.7e-207 724.2 404 88.9
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 7.4e-207 723.8 404 88.1
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.3e-206 723.0 403 88.8
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.1e-206 722.2 407 89.9
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.8e-206 721.8 407 90.2
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 6.3e-206 720.7 403 88.6
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 8.2e-206 720.3 407 88.2
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.1e-205 719.9 408 90.9
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.4e-205 719.5 405 89.9
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.4e-205 719.5 403 88.1
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 3.1e-205 718.4 407 88.2
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.2e-204 716.5 413 87.2
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.6e-204 715.3 403 88.6
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 4.5e-204 714.5 403 89.1
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 7.6e-204 713.8 403 88.6
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.7e-203 712.6 405 88.6
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 1.7e-203 712.6 403 86.6
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.2e-203 712.2 403 89.1
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.9e-203 711.8 405 88.4
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 2.9e-203 711.8 405 88.4
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.9e-203 711.8 399 89.0
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.5e-203 710.7 405 88.4
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.5e-203 710.7 405 88.4
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 8.5e-203 710.3 404 89.1
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 8.5e-203 710.3 404 87.1
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.1e-202 709.9 404 88.9
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.1e-202 709.9 405 88.1
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.1e-202 709.9 403 87.8
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.9e-202 709.1 405 88.4
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 9.3e-202 706.8 403 87.6
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 2.1e-201 705.7 419 85.9
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 4.6e-201 704.5 403 87.8
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 4.6e-201 704.5 405 87.7
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 6.1e-201 704.1 408 87.3
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 7.9e-201 703.7 404 86.6
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 3.0e-200 701.8 407 86.2
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 3.9e-200 701.4 408 86.8
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.9e-200 701.4 408 87.0
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 5.1e-200 701.0 405 87.2
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 5.1e-200 701.0 408 86.5
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 5.1e-200 701.0 408 86.5
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 6.7e-200 700.7 408 87.3
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 6.7e-200 700.7 408 87.3
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 6.7e-200 700.7 371 92.5
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 8.7e-200 700.3 414 86.5
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-199 699.9 408 86.5
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.1e-199 699.9 408 87.0
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.5e-199 699.5 407 87.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 4.3e-199 698.0 408 86.3
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.7e-199 697.6 403 86.1
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.6e-198 696.0 408 86.3
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.6e-198 696.0 403 87.1
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.1e-197 693.3 404 88.4
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.4e-197 693.0 405 86.2
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.8e-197 692.6 403 86.6
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.8e-197 692.6 403 86.8
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.8e-197 692.6 403 86.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 2.4e-197 692.2 404 86.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 4.1e-197 691.4 403 86.6
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 4.1e-197 691.4 425 84.5
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 5.3e-197 691.0 403 86.6
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 6.9e-197 690.6 403 86.8
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.5e-196 688.0 412 85.0
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 7.7e-196 687.2 408 85.5
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.0e-195 686.8 408 85.0
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.0e-195 686.8 404 84.7
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.0e-195 686.8 410 84.9
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 2.9e-195 685.3 403 85.9
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.4e-194 682.9 404 84.7
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.9e-194 682.6 403 85.1
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 3.2e-194 681.8 415 83.1
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 5.5e-194 681.0 408 85.8
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 7.2e-194 680.6 357 93.0
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.1e-193 679.1 406 84.5
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.6e-193 678.3 404 83.4
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.6e-193 677.9 357 92.7
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 6.1e-193 677.6 388 85.8
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 7.9e-193 677.2 424 82.1
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.4e-192 676.4 390 87.2
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.4e-192 676.4 372 89.0
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.0e-191 672.5 405 84.7
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.0e-191 672.5 405 84.7
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.0e-191 672.5 400 85.0
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.6e-191 672.2 377 87.5
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 3.3e-191 671.8 384 87.8
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 7.4e-191 670.6 407 84.0
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.7e-190 669.5 406 83.7
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 2.2e-190 669.1 375 89.1
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 3.7e-190 668.3 404 83.2
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 7.7e-188 660.6 410 82.7
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 6.5e-187 657.5 385 84.7
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 4.5e-180 634.8 333 92.2
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.5e-178 629.0 373 85.3
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.2e-176 621.3 405 78.0
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 2.8e-174 615.5 353 83.3
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.7e-174 615.1 357 82.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.2e-172 610.1 368 79.9
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.7e-172 609.0 364 81.0
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 3.5e-172 608.6 407 78.9
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.9e-162 576.2 396 75.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 2.3e-160 569.3 334 87.4
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 3.0e-160 568.9 343 84.0
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.8e-158 562.4 320 89.1
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.2e-151 540.4 316 87.0
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.3e-150 537.0 357 72.8
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 4.9e-150 535.0 404 71.8
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.6e-145 520.0 377 67.1
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.8e-143 510.8 304 84.5
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 4.1e-141 505.4 268 89.9
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.6e-140 503.4 298 87.2
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.0e-139 500.7 287 87.8
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.1e-138 497.3 345 70.7
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.1e-133 480.7 364 66.8
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.3e-130 469.2 375 62.1
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.8e-129 466.1 248 91.5
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 4.0e-120 435.6 285 77.9
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.5e-116 422.5 278 77.0
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 2.9e-102 376.3 249 73.9
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 2.3e-99 366.7 316 63.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.7e-60 236.9 132 86.4
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 3.6e-60 236.5 132 85.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 6.1e-52 209.1 370 37.3
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.3e-49 201.4 118 83.9
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.8e-49 200.3 118 83.1
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.3e-43 180.6 104 85.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-42 178.3 103 85.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.2e-42 178.3 103 85.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 5.6e-37 159.5 94 83.0
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.0e-35 155.2 99 83.8
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.8e-35 154.5 101 78.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.9e-33 146.4 94 75.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.1e-27 128.6 139 54.7
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.4e-27 128.3 105 67.6
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.9e-24 117.9 71 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 5.0e-22 109.8 59 86.4
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.6e-20 104.8 62 82.3
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.8e-20 104.0 81 67.9
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.8e-20 104.0 47 93.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 2.0e-18 97.8 59 81.4
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 1.6e-15 88.2 77 68.8
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 1.0e-06 58.9 53 60.4


User provided reference genes

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