Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 3.9e-90 334.7 164 100.0
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 8.6e-37 157.5 165 58.8
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.1e-34 150.6 169 58.0
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 1.1e-34 150.6 166 51.8
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 1.1e-34 150.6 163 54.0
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 1.1e-34 150.6 175 54.9
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.5e-33 146.7 169 57.4
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 2.0e-33 146.4 168 53.6
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 3.4e-33 145.6 164 53.0
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 4.9e-32 141.7 168 53.0
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.2e-25 120.6 133 54.9
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 7.5e-25 117.9 164 47.6
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 7.3e-20 101.3 167 40.1
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.6e-19 99.0 161 38.5
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.2e-19 98.2 161 38.5
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 8.1e-19 97.8 166 40.4
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.1e-18 97.4 173 41.0
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 1.1e-18 97.4 162 39.5
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.1e-18 97.4 161 38.5
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 1.4e-18 97.1 162 38.9
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 2.4e-18 96.3 159 39.0
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 5.2e-18 95.1 162 40.1
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 8.9e-18 94.4 161 37.3
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 1.5e-17 93.6 162 36.4
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 2.0e-17 93.2 101 53.5
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 2.6e-17 92.8 165 38.8
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 2.6e-17 92.8 164 37.8
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 7.6e-17 91.3 164 39.6
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 9.9e-17 90.9 162 39.5
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.3e-16 90.5 171 40.4
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.3e-16 90.5 162 36.4
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.3e-16 90.5 162 38.9
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.2e-16 89.7 158 36.1
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 2.9e-16 89.4 162 39.5
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 4.9e-16 88.6 163 39.9
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 6.4e-16 88.2 158 37.3
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 8.4e-16 87.8 160 36.9
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.1e-15 87.4 168 38.7
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 2.4e-15 86.3 167 37.1
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 3.2e-15 85.9 162 38.9
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 4.2e-15 85.5 164 36.6
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 7.1e-15 84.7 171 33.9
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.2e-14 84.0 166 41.6
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 1.6e-14 83.6 131 44.3
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 1.6e-14 83.6 165 38.8
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 3.5e-14 82.4 160 38.1
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 4.6e-14 82.0 164 37.8
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 6.0e-14 81.6 159 35.8
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 6.0e-14 81.6 164 38.4
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.0e-13 80.9 164 36.6
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 1.3e-13 80.5 163 33.7
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 1.3e-13 80.5 135 40.0
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.3e-13 80.5 164 39.6
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 1.3e-13 80.5 164 37.8
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 2.3e-13 79.7 166 35.5
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.3e-13 79.7 142 37.3
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 3.0e-13 79.3 166 34.9
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.1e-12 77.4 63 63.5
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.9e-12 76.6 156 37.2
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 2.5e-12 76.3 63 58.7
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 4.3e-12 75.5 161 37.3
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 5.6e-12 75.1 162 34.6
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 7.3e-12 74.7 146 35.6
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 9.6e-12 74.3 165 38.2
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 3.6e-11 72.4 172 37.8
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 3.6e-11 72.4 63 55.6
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 3.6e-11 72.4 63 55.6
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 3.6e-11 72.4 63 55.6
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 3.6e-11 72.4 179 36.3
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 4.7e-11 72.0 172 34.3
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 4.7e-11 72.0 162 35.2
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 4.7e-11 72.0 88 47.7
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 6.2e-11 71.6 169 36.7
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 8.1e-11 71.2 158 35.4
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 8.1e-11 71.2 167 34.7
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 1.1e-10 70.9 168 32.7
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 1.1e-10 70.9 163 35.0
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 1.1e-10 70.9 112 39.3
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.4e-10 70.5 63 54.0
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 1.4e-10 70.5 63 54.0
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.4e-10 70.5 63 54.0
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 1.4e-10 70.5 63 55.6
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.8e-10 70.1 159 32.7
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.4e-10 69.7 88 47.7
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 4.0e-10 68.9 145 35.2
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 6.9e-10 68.2 63 52.4
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 6.9e-10 68.2 163 35.0
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 1.2e-09 67.4 136 33.8
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 2.6e-09 66.2 68 50.0
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 5.8e-09 65.1 63 47.6
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 1.7e-08 63.5 72 41.7
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.1e-07 60.8 64 51.6
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.1e-07 60.8 136 29.4
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 1.9e-07 60.1 139 33.1
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.9e-07 60.1 64 50.0
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.4e-07 59.7 168 33.9
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 3.2e-07 59.3 66 50.0
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 5.4e-07 58.5 161 31.7
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 7.1e-07 58.2 56 51.8


User provided reference genes

Program Settings