Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 8.4e-166 587.0 312 100.0
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.5e-117 426.0 428 62.6
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 4.1e-80 302.4 376 52.1
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.1e-76 290.0 421 48.0
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 2.1e-76 290.0 430 48.1
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 8.0e-76 288.1 336 53.9
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 3.0e-75 286.2 419 47.3
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.5e-74 283.9 336 53.3
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 4.4e-74 282.3 324 53.7
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 1.6e-68 263.8 273 56.8
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 4.0e-67 259.2 435 44.8
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.6e-66 256.5 436 45.0
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.1e-56 224.6 375 43.7
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 4.1e-56 222.6 391 40.2
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 5.6e-53 212.2 437 37.5
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 7.3e-53 211.8 205 58.0
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 9.5e-53 211.5 381 40.2
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 3.4e-50 203.0 325 43.4
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 4.4e-50 202.6 423 38.1
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 9.9e-50 201.4 428 37.4
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.8e-49 199.5 370 40.3
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 4.9e-49 199.1 426 36.6
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.4e-49 198.7 370 39.7
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 1.1e-48 198.0 261 48.3
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.9e-48 197.2 428 37.1
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 7.1e-48 195.3 347 40.9
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 7.1e-48 195.3 370 39.5
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 9.2e-48 194.9 370 39.2
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.2e-47 194.5 372 38.7
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 1.2e-47 194.5 426 36.2
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.1e-47 193.7 437 37.5
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.6e-47 192.6 370 38.9
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.0e-46 191.4 239 53.6
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 3.0e-46 189.9 373 37.8
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 3.0e-46 189.9 371 39.1
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 3.9e-46 189.5 359 37.9
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 2.5e-45 186.8 384 38.5
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.3e-45 186.4 375 38.7
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 4.3e-45 186.0 358 38.3
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 7.3e-45 185.3 254 49.6
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 9.6e-45 184.9 434 35.3
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 1.6e-44 184.1 373 38.6
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.1e-44 183.7 375 38.4
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 2.8e-44 183.3 431 36.2
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 4.7e-44 182.6 351 40.5
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 4.7e-44 182.6 248 47.2
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 8.1e-44 181.8 373 39.1
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.8e-43 180.6 331 41.4
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 4.0e-43 179.5 328 42.4
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 5.2e-43 179.1 307 41.4
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 5.2e-43 179.1 287 42.9
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.5e-42 177.6 245 44.9
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 2.6e-42 176.8 302 43.4
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 3.4e-42 176.4 410 37.1
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 5.8e-42 175.6 266 41.7
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 7.6e-42 175.3 358 36.6
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 9.9e-42 174.9 325 40.3
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.7e-41 174.1 352 36.4
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.9e-41 173.3 409 39.4
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 4.9e-41 172.6 252 44.8
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 8.4e-41 171.8 240 45.8
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.4e-40 170.2 315 39.4
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 2.4e-40 170.2 295 40.7
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 5.4e-40 169.1 306 39.9
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 7.1e-40 168.7 306 39.9
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 7.1e-40 168.7 295 40.3
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.1e-39 167.2 434 32.3
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.0e-38 164.9 312 40.4
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 1.3e-38 164.5 352 37.2
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.7e-38 164.1 262 43.5
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 2.3e-38 163.7 336 35.4
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.9e-38 162.9 262 43.1
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 6.6e-38 162.2 271 39.9
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.1e-37 161.4 257 39.3
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 1.9e-37 160.6 317 37.9
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.9e-37 160.6 311 38.9
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 3.3e-37 159.8 326 37.7
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 3.3e-37 159.8 335 37.6
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 5.6e-37 159.1 377 34.2
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.6e-36 157.5 312 36.5
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 2.8e-36 156.8 269 40.1
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 2.8e-36 156.8 269 40.1
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 3.1e-35 153.3 315 40.0
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 4.0e-35 152.9 212 45.8
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 4.0e-35 152.9 357 37.0
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 5.3e-35 152.5 314 37.3
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 9.0e-35 151.8 362 34.8
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 9.0e-35 151.8 163 50.9
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 9.0e-35 151.8 265 39.2
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 2.0e-34 150.6 252 38.5
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 2.6e-34 150.2 236 41.1
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-33 147.9 358 38.0
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.2e-33 147.1 245 43.3
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.9e-33 146.7 194 44.8
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.8e-33 146.4 393 36.1
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.4e-33 145.6 252 42.5
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 6.4e-33 145.6 255 44.3
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.4e-32 144.4 319 36.7
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 2.4e-32 143.7 316 37.0
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 2.4e-32 143.7 413 33.2
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 5.4e-32 142.5 254 43.3
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 2.7e-31 140.2 188 43.1
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 4.6e-31 139.4 318 36.8
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 6.0e-31 139.0 229 41.5
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.3e-30 137.9 315 37.5
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.3e-30 137.9 337 34.1
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.8e-30 137.5 252 41.7
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.3e-30 137.1 263 40.3
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 3.0e-30 136.7 355 34.9
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 5.1e-30 136.0 216 44.9
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 3.3e-29 133.3 247 40.9
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 8.1e-28 128.6 345 31.6
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.4e-27 127.1 232 40.9
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.1e-27 126.7 383 34.5
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 2.0e-26 124.0 187 41.7
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.7e-25 120.9 336 32.4
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 4.2e-24 116.3 108 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 2.7e-23 113.6 190 41.6
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 8.7e-22 108.6 259 32.8
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 9.0e-19 98.6 275 31.3
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.5e-18 97.8 136 44.9
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.0e-18 97.4 156 43.6
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 4.6e-15 86.3 75 58.7
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 3.3e-13 80.1 129 41.1
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 1.6e-12 77.8 130 43.8
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.1e-11 75.1 180 33.9
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.8e-11 74.3 265 30.2
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 1.8e-11 74.3 115 38.3
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-10 71.2 77 53.2
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 4.5e-10 69.7 66 54.5
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 5.0e-09 66.2 67 50.7


User provided reference genes

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