Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 2.1e-269 931.8 465 100.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 7.7e-208 727.2 485 76.5
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 6.5e-207 724.2 485 77.3
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 4.5e-200 701.4 480 75.2
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 5.0e-199 698.0 485 74.2
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 3.6e-197 691.8 470 74.3
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.1e-197 691.0 476 74.2
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 5.2e-196 688.0 451 76.1
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 5.9e-192 674.5 495 69.7
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 4.9e-186 654.8 480 70.4
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 9.2e-185 650.6 483 70.4
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.2e-184 650.2 474 68.6
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 3.5e-184 648.7 373 81.5
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 5.0e-183 644.8 471 69.2
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 6.6e-183 644.4 471 69.0
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 9.5e-182 640.6 481 66.3
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.6e-181 639.8 414 75.1
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 1.6e-181 639.8 439 72.0
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 8.0e-181 637.5 485 65.2
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 8.0e-181 637.5 373 80.7
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.2e-179 633.6 485 64.9
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 2.2e-178 629.4 364 81.3
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.2e-178 629.4 489 63.8
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 3.7e-178 628.6 484 66.7
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 4.9e-178 628.2 405 73.8
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 6.4e-178 627.9 397 75.6
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 6.4e-178 627.9 373 79.6
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.1e-177 627.1 489 63.4
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.4e-177 626.7 480 67.7
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.9e-177 626.3 489 63.4
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 2.4e-177 625.9 483 65.6
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.4e-177 625.9 428 72.2
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 3.2e-177 625.5 484 63.8
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 4.1e-177 625.2 447 69.1
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.6e-176 623.2 381 79.8
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 2.7e-176 622.5 405 74.8
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 6.0e-176 621.3 420 72.9
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 3.0e-175 619.0 376 77.4
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.5e-174 616.7 479 65.8
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 7.3e-174 614.4 447 68.5
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 7.3e-174 614.4 447 68.5
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 2.1e-173 612.8 486 64.6
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.1e-173 612.8 366 79.2
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 6.2e-173 611.3 372 77.7
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.4e-172 610.1 363 79.6
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.4e-172 610.1 363 79.6
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 8.9e-172 607.4 389 74.6
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 5.8e-171 604.7 372 77.4
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 9.8e-171 604.0 429 69.2
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 4.9e-170 601.7 411 70.6
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 8.3e-170 600.9 389 73.5
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.4e-169 600.1 372 77.7
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 1.9e-169 599.7 389 73.5
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.9e-169 599.7 411 70.3
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 2.4e-169 599.4 389 73.3
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.2e-169 599.0 387 74.4
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 4.1e-169 598.6 389 73.3
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 7.1e-169 597.8 373 76.4
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 9.2e-169 597.4 375 74.7
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 2.1e-168 596.3 373 76.1
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 7.8e-168 594.3 377 73.7
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.3e-167 593.6 371 76.5
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.3e-167 592.8 488 62.7
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 3.0e-167 592.4 407 71.0
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 8.6e-167 590.9 443 67.0
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.5e-166 590.1 372 74.5
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.5e-166 590.1 482 63.3
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 2.5e-166 589.3 378 74.1
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 4.7e-165 585.1 379 74.9
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.1e-164 583.9 370 76.2
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.3e-164 582.8 406 71.9
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 5.2e-164 581.6 370 75.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 6.8e-164 581.3 477 62.1
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 6.8e-164 581.3 412 69.2
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 5.8e-163 578.2 382 70.9
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.3e-162 577.0 409 69.9
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.7e-162 576.6 447 64.9
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 6.4e-162 574.7 354 78.5
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 8.4e-162 574.3 385 73.2
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.1e-161 573.9 472 63.1
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.4e-161 573.5 483 61.7
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.4e-161 572.8 366 75.7
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.4e-161 572.8 492 60.8
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 5.4e-161 571.6 476 63.4
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 2.5e-158 562.8 389 70.4
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 3.6e-157 558.9 373 70.0
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 6.2e-157 558.1 376 72.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.3e-149 533.9 303 80.2
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.6e-149 533.5 367 71.1
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 2.1e-149 533.1 399 66.4
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 3.6e-149 532.3 455 59.8
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 8.1e-149 531.2 374 68.7
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 3.1e-148 529.3 373 67.6
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 9.0e-148 527.7 382 66.0
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.8e-146 522.3 355 69.3
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.6e-144 515.4 372 68.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 7.9e-144 514.6 403 64.3
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 5.6e-142 508.4 386 66.1
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 5.8e-139 498.4 286 82.2
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.6e-136 490.3 366 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 5.8e-131 471.9 369 61.8
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.1e-125 453.4 335 65.1
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 2.9e-122 443.0 389 58.1
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.7e-120 436.4 353 58.9
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 2.7e-112 409.8 244 75.0
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.1e-108 396.4 294 61.9
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 2.1e-96 357.1 244 69.7
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 3.6e-96 356.3 198 81.3
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.6e-96 356.3 376 54.3
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.8e-92 344.0 193 79.8
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 8.8e-79 298.5 239 61.1
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.0e-71 273.1 204 59.8
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.2e-70 271.6 204 59.3
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.7e-69 267.7 204 57.8
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.7e-69 267.7 204 59.3
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.5e-65 253.8 322 41.0
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 4.7e-64 249.6 356 40.2
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.9e-52 211.1 210 51.4
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 4.7e-40 169.9 141 67.4
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-33 147.9 98 63.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 1.9e-20 104.8 93 65.6
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 9.6e-17 92.4 84 63.1
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 2.5e-12 77.8 167 34.1
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 6.0e-11 73.2 272 23.9
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 7.9e-11 72.8 272 23.9
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.3e-10 72.0 381 22.8
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 3.0e-10 70.9 374 23.3
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.9e-10 70.5 290 22.8
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.9e-10 70.5 265 23.4
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.9e-10 70.5 266 21.8
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 8.7e-10 69.3 297 22.2
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 8.7e-10 69.3 297 22.2
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.1e-09 68.9 259 21.2
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.1e-09 68.9 271 24.0
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.3e-09 67.4 297 22.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 5.7e-09 66.6 243 21.4
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 7.4e-09 66.2 297 22.2
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.3e-08 65.5 236 22.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 1.6e-08 65.1 297 22.2
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.8e-08 64.3 299 23.1
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.8e-08 64.3 300 23.3
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 3.7e-08 63.9 158 22.8
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 3.7e-08 63.9 268 20.9
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.7e-08 63.9 297 21.2
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 8.2e-08 62.8 268 20.5
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.1e-07 62.4 240 22.9
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.4e-07 62.0 137 23.4
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.8e-07 61.6 243 22.6
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.8e-07 61.6 237 22.4
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 6.9e-07 59.7 188 21.8
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.5e-06 58.5 293 21.8
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.5e-06 58.5 132 25.0


User provided reference genes

Program Settings