Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 9.7e-286 986.1 489 100.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.2e-245 852.0 491 87.2
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.2e-245 852.0 491 87.2
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 7.8e-243 843.6 490 85.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.3e-242 842.0 489 85.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 5.8e-238 827.4 490 84.3
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 2.2e-237 825.5 490 84.3
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.5e-235 818.1 490 83.9
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 3.6e-224 781.6 489 78.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.7e-224 781.2 489 78.5
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.8e-223 779.2 462 84.0
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.6e-222 775.4 489 79.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-220 769.6 500 76.8
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.2e-219 766.5 490 80.2
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-212 743.0 489 76.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 4.6e-211 738.0 461 79.8
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.0e-195 684.5 489 69.7
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.8e-192 675.6 489 68.3
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.0e-190 669.5 501 67.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.8e-189 665.2 489 67.5
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 4.9e-189 664.8 500 66.8
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.9e-188 662.9 489 68.9
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.8e-186 656.4 488 68.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.9e-186 655.2 488 68.0
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.1e-185 653.7 489 68.1
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.9e-181 639.0 493 67.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 8.4e-181 637.5 489 66.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 8.4e-181 637.5 483 67.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 8.4e-181 637.5 496 65.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 7.2e-180 634.4 489 64.4
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 9.3e-180 634.0 494 66.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.1e-179 632.9 494 66.4
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.9e-178 628.6 494 66.0
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 8.7e-178 627.5 491 65.0
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.6e-176 623.2 491 63.7
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.6e-176 623.2 491 63.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.2e-176 622.9 492 64.2
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 4.8e-176 621.7 498 64.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.4e-175 620.2 491 63.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.4e-175 619.4 491 65.0
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 6.9e-175 617.8 482 65.4
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.2e-174 617.1 478 64.6
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.7e-173 613.2 491 62.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.6e-171 606.7 493 62.7
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 6.1e-171 604.7 478 64.0
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.9e-171 604.4 450 65.6
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 6.3e-168 594.7 399 73.7
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.7e-165 586.6 528 58.5
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.0e-165 585.1 495 61.2
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-164 583.9 488 59.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.1e-164 583.9 441 65.5
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.5e-164 582.8 495 61.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.1e-163 579.7 488 59.6
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.0e-162 575.9 488 59.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.0e-162 575.9 487 60.4
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 8.8e-162 574.3 742 45.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-161 573.2 474 61.0
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.7e-160 570.1 399 70.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.8e-160 569.3 477 60.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.8e-159 566.6 490 58.6
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 4.1e-159 565.5 462 61.7
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.6e-158 563.5 448 63.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.6e-158 562.8 490 61.0
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.7e-157 560.1 461 60.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.5e-156 556.2 438 63.9
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.2e-156 555.8 489 58.3
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 2.0e-153 546.6 404 67.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.7e-153 545.0 488 57.6
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 5.7e-153 545.0 461 61.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.7e-152 543.5 488 57.4
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.3e-152 541.6 495 58.2
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-151 540.4 489 57.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 7.0e-151 538.1 444 60.1
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.7e-150 536.2 402 65.7
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 5.9e-150 535.0 416 65.4
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.9e-150 535.0 549 52.8
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 7.7e-150 534.6 448 61.6
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.2e-148 529.3 502 56.6
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 4.2e-148 528.9 427 60.4
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.8e-146 523.5 487 57.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.3e-146 523.1 487 57.7
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.0e-146 522.7 401 63.8
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 8.8e-146 521.2 402 62.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.2e-145 520.8 419 64.2
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-145 520.8 419 64.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.5e-145 520.4 449 61.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.5e-145 520.4 480 56.0
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-145 520.0 488 55.5
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.4e-145 519.2 433 60.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 7.5e-145 518.1 496 55.6
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.2e-144 516.5 402 62.4
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.8e-144 516.2 489 56.0
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.8e-144 516.2 402 63.7
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.8e-144 516.2 419 63.5
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.8e-144 515.4 522 53.6
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 8.3e-144 514.6 429 59.4
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 8.3e-144 514.6 429 59.4
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 8.3e-144 514.6 419 64.0
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-143 514.2 429 59.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.1e-143 514.2 484 55.6
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.1e-143 514.2 485 56.3
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.1e-143 514.2 492 55.3
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.4e-143 513.8 447 60.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.4e-143 513.8 406 63.5
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-143 513.8 397 63.7
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.4e-143 513.1 402 62.4
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.4e-143 513.1 394 65.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.4e-143 513.1 476 56.3
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-142 510.4 398 65.3
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.6e-142 510.4 407 63.6
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-142 510.0 432 59.7
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.7e-142 509.6 507 56.6
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.0e-141 507.7 489 56.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.2e-141 506.5 482 55.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.9e-141 506.1 513 52.8
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.9e-141 506.1 415 63.4
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 3.8e-141 505.8 496 54.8
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.0e-141 505.4 482 55.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.5e-140 503.1 552 53.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 7.2e-140 501.5 495 55.4
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 7.2e-140 501.5 495 55.4
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 7.2e-140 501.5 495 55.4
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-139 500.7 430 58.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.2e-139 500.7 362 67.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.6e-139 499.2 400 63.5
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.1e-139 498.4 399 61.9
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.0e-139 498.0 360 67.5
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-138 497.3 495 54.7
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.3e-138 496.5 495 54.7
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.0e-138 495.7 402 60.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.2e-138 495.4 477 56.8
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 8.8e-138 494.6 402 61.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.4e-135 487.3 405 61.0
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.2e-134 484.2 471 55.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.7e-133 480.3 487 55.2
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 4.7e-131 472.2 458 55.0
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.7e-131 472.2 370 63.2
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.4e-129 465.7 615 46.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 4.9e-128 462.2 317 71.6
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.2e-123 445.3 311 68.8
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.2e-121 441.0 403 55.1
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.2e-119 433.0 379 59.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.0e-118 430.3 405 55.6
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.7e-117 427.2 401 52.6
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 8.6e-117 424.9 400 53.0
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 8.1e-107 391.7 380 52.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.2e-87 326.6 257 64.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-82 311.6 218 69.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-78 298.1 222 66.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.2e-78 298.1 254 58.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 7.9e-78 295.4 248 60.1
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.1e-76 291.6 279 54.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 9.3e-71 271.9 218 62.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.4e-65 253.4 241 54.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-64 250.0 311 45.0
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.2e-55 219.9 413 38.5
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.5e-49 201.4 273 42.5
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.4e-49 200.3 422 34.1
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-37 161.0 121 66.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 6.7e-37 159.5 212 42.9
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.2e-35 154.5 263 41.8
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.5e-33 147.1 171 48.0
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 6.1e-30 136.3 286 33.6
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.2e-29 133.3 102 65.7
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.5e-28 131.7 662 23.9
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.4e-26 124.4 120 57.5
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.4e-26 123.2 130 50.0
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 6.5e-24 116.3 79 67.1
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.4e-18 97.8 101 48.5
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 6.6e-16 89.7 236 34.3
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.9e-13 79.3 48 70.8
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.0e-09 68.2 47 63.8
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 3.0e-08 64.3 368 25.3
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.9e-07 61.6 89 42.7


User provided reference genes

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