Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 3.1e-246 854.7 447 100.0
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.4e-193 679.9 450 81.6
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 6.3e-191 671.0 451 79.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.6e-189 666.4 428 84.8
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 3.0e-185 652.1 422 81.3
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 9.7e-184 647.1 440 77.5
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.8e-183 645.6 448 77.0
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.4e-182 643.3 449 78.4
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.0e-177 625.5 441 76.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.2e-176 623.6 442 76.9
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.0e-176 622.9 448 76.6
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 9.8e-176 620.5 447 75.4
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 9.1e-174 614.0 447 75.2
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.5e-171 606.7 439 73.8
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.2e-168 597.0 417 77.5
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.7e-162 575.1 442 72.6
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 7.5e-160 567.8 450 70.2
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 6.8e-153 544.7 438 65.8
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 7.0e-150 534.6 453 63.8
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 7.8e-149 531.2 433 64.2
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 5.1e-148 528.5 438 63.9
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.1e-147 527.3 434 63.1
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.1e-147 527.3 438 63.9
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 5.6e-147 525.0 435 64.4
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 9.5e-147 524.2 438 62.6
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.6e-146 523.5 444 61.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.2e-145 518.5 436 63.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.0e-144 516.5 434 62.9
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.4e-144 515.4 428 61.4
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 5.8e-144 515.0 438 61.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 7.5e-144 514.6 437 62.5
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 4.9e-143 511.9 445 61.8
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.4e-143 511.5 432 62.5
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.4e-142 509.6 446 60.8
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 5.4e-142 508.4 429 61.3
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.1e-142 508.1 436 63.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-141 507.3 437 60.0
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.6e-141 506.9 447 60.6
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.0e-140 504.2 431 62.2
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.0e-140 504.2 429 62.7
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.3e-140 503.8 431 62.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 5.1e-140 501.9 440 60.7
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.5e-139 500.4 434 61.5
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.5e-139 500.4 434 61.1
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.9e-139 500.0 431 62.6
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 2.5e-139 499.6 434 61.8
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.3e-139 499.2 433 61.2
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 5.6e-139 498.4 431 62.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 5.6e-139 498.4 438 60.7
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 7.3e-139 498.0 434 61.1
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.6e-138 496.9 439 60.4
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 3.6e-138 495.7 431 62.6
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 4.7e-138 495.4 435 61.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 6.2e-138 495.0 431 62.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 8.1e-138 494.6 429 60.6
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 8.1e-138 494.6 431 61.0
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.8e-137 493.4 434 59.9
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.8e-137 493.4 435 60.9
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.4e-137 493.0 434 59.7
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.2e-137 491.9 436 60.6
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 6.8e-137 491.5 429 60.8
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.2e-136 490.7 435 60.2
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.2e-136 490.7 438 60.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.5e-136 490.3 431 61.9
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-136 490.3 436 60.3
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-136 490.3 436 60.3
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.5e-136 490.3 439 60.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 4.4e-136 488.8 439 59.5
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 7.6e-136 488.0 438 60.3
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 9.9e-136 487.6 434 59.7
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 2.2e-135 486.5 438 59.8
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.9e-135 486.1 419 60.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 3.8e-135 485.7 443 57.8
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 4.9e-135 485.3 434 59.2
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.4e-134 483.8 447 59.3
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 5.4e-134 481.9 434 60.1
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 3.5e-133 479.2 431 60.1
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 4.6e-133 478.8 440 59.8
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 4.6e-133 478.8 434 59.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 6.0e-133 478.4 434 59.7
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.0e-132 477.6 446 58.5
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.3e-132 477.2 437 57.4
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-132 477.2 443 58.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.3e-132 476.5 429 58.3
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.0e-132 476.1 412 61.2
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 8.7e-132 474.6 433 57.3
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 8.7e-132 474.6 433 58.2
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.9e-131 473.4 436 58.5
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 4.3e-131 472.2 434 59.2
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 9.6e-131 471.1 439 58.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-130 470.7 434 58.8
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.2e-130 468.4 434 59.0
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.1e-129 467.6 443 57.8
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 3.1e-129 466.1 434 58.8
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 2.0e-128 463.4 438 56.4
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 3.4e-128 462.6 434 58.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.4e-128 462.6 438 56.8
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 4.4e-128 462.2 429 59.2
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.4e-128 462.2 522 50.6
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.9e-127 459.5 433 57.7
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.1e-126 457.6 439 56.3
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.1e-126 457.6 434 58.3
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 9.3e-126 454.5 441 57.1
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.5e-125 452.6 434 56.9
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-124 450.7 467 54.8
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.7e-124 450.3 345 69.3
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.6e-122 443.7 303 78.2
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.8e-122 443.0 373 61.4
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 8.1e-122 441.4 439 55.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.5e-120 435.6 476 53.2
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 7.6e-120 434.9 377 61.5
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.2e-119 433.3 433 56.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.9e-119 432.2 417 56.1
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.7e-117 426.4 425 58.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.1e-115 421.0 436 53.7
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.2e-112 411.0 434 51.6
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.2e-111 406.8 442 52.9
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.8e-108 397.1 391 56.8
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 9.6e-107 391.3 434 50.2
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.4e-104 382.9 434 51.4
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-103 380.9 436 52.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 4.5e-96 355.9 305 59.7
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 5.0e-95 352.4 516 44.4
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.2e-93 347.8 345 57.4
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.1e-91 341.3 434 47.0
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.4e-89 334.3 434 47.2
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.8e-87 326.2 430 42.3
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 4.7e-85 319.3 438 42.2
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 4.1e-81 306.2 312 52.6
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 8.5e-79 298.5 385 49.4
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.6e-67 260.4 251 57.8
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.5e-67 258.8 178 68.5
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.1e-65 253.1 179 68.7
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.3e-58 231.5 199 62.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.1e-57 226.9 431 38.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 4.1e-57 226.5 327 42.2
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 5.4e-57 226.1 173 65.3
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.2e-56 224.9 168 64.3
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.6e-48 198.0 193 56.5
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 8.0e-45 185.7 120 86.7
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.0e-41 172.6 161 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 8.6e-39 165.6 139 56.1
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.4e-34 149.4 147 58.5
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-30 138.3 247 39.7
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.3e-28 131.0 112 62.5
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-24 118.6 81 66.7
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.9e-22 111.3 88 60.2
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.9e-17 94.7 162 39.5
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.2e-17 94.0 97 54.6
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.0e-15 87.4 428 26.2
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 5.1e-15 86.7 113 46.0
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.3e-14 84.0 80 60.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.8e-13 80.9 379 26.1
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 7.9e-08 62.8 207 24.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.3e-06 57.4 200 23.0


User provided reference genes

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