Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.5e-98 362.8 186 100.0
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 7.6e-82 307.4 184 85.3
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.1e-80 303.5 181 85.6
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.4e-80 303.1 183 85.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.2e-80 302.0 186 82.3
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.5e-80 301.2 183 85.2
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.6e-79 299.7 183 84.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 3.5e-79 298.5 186 81.2
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 7.9e-79 297.4 184 81.0
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.3e-78 296.6 186 81.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.3e-78 296.6 184 79.9
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.8e-78 296.2 186 81.7
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 1.8e-78 296.2 185 80.5
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.0e-78 295.4 175 86.9
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 3.9e-78 295.0 184 81.5
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 6.7e-78 294.3 185 80.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.1e-77 293.5 186 82.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-77 293.5 186 80.1
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.1e-77 293.5 186 80.1
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.9e-77 292.7 186 79.0
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.9e-77 292.7 186 80.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.9e-77 292.7 186 79.6
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.9e-77 292.7 186 79.6
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.9e-77 292.7 186 79.6
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 3.3e-77 292.0 186 80.1
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 3.3e-77 292.0 186 81.2
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.3e-77 291.6 178 82.6
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 4.3e-77 291.6 186 80.1
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 7.4e-77 290.8 183 79.8
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 9.6e-77 290.4 184 79.3
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 9.6e-77 290.4 184 79.3
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 9.6e-77 290.4 186 78.5
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 9.6e-77 290.4 186 79.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.3e-76 290.0 186 78.0
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.1e-76 289.3 185 80.0
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 2.1e-76 289.3 186 79.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 4.8e-76 288.1 186 79.0
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 4.8e-76 288.1 186 79.0
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.8e-76 288.1 186 80.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 4.8e-76 288.1 179 80.4
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 6.2e-76 287.7 185 76.2
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 6.2e-76 287.7 186 79.0
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 8.2e-76 287.3 186 78.5
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.1e-75 287.0 186 77.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.8e-75 286.2 185 76.2
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.8e-75 286.2 185 76.2
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 4.0e-75 285.0 177 80.8
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 4.0e-75 285.0 178 80.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 4.0e-75 285.0 178 80.3
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 4.0e-75 285.0 183 77.6
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 5.3e-75 284.6 184 76.6
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 9.0e-75 283.9 178 80.9
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.2e-74 283.5 184 75.5
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.2e-74 283.5 178 80.3
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.5e-74 283.1 179 81.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.6e-74 282.3 179 79.9
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 3.4e-74 282.0 179 79.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.5e-74 281.6 179 77.1
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 4.5e-74 281.6 186 78.0
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.6e-74 280.8 184 74.5
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-73 280.0 176 80.1
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.7e-73 279.6 181 79.0
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.9e-73 278.9 181 77.9
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.9e-73 278.9 173 79.2
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 6.5e-73 277.7 183 74.3
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 8.4e-73 277.3 186 77.4
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.9e-72 276.2 210 69.5
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.5e-72 275.8 210 70.0
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.5e-72 275.8 177 80.8
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 3.2e-72 275.4 177 79.1
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 7.1e-72 274.2 184 76.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 7.1e-72 274.2 179 78.2
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.2e-71 273.5 181 76.8
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.6e-71 273.1 179 77.7
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.6e-71 273.1 161 87.0
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.1e-71 272.7 179 77.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.5e-71 271.9 184 76.1
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 6.0e-71 271.2 161 84.5
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 7.9e-71 270.8 184 75.5
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.9e-71 270.8 184 75.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.0e-70 270.4 179 77.1
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.3e-70 269.2 185 74.1
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 3.9e-70 268.5 188 74.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.1e-70 268.1 181 74.6
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 5.1e-70 268.1 180 74.4
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.9e-69 266.2 177 76.8
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-69 266.2 185 74.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-69 266.2 185 74.1
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.5e-69 265.8 175 75.4
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.5e-69 265.8 177 77.4
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.3e-69 265.4 176 77.8
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 4.3e-69 265.0 177 75.1
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.2e-68 262.7 175 78.3
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.8e-68 262.3 183 73.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.8e-68 262.3 177 76.8
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.7e-68 261.9 174 78.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 4.8e-68 261.5 174 78.2
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.8e-68 261.5 158 83.5
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.4e-67 260.0 177 75.1
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.8e-67 259.6 174 77.6
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.8e-67 259.6 174 77.6
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.8e-67 259.6 171 78.4
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.1e-67 258.8 174 77.6
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 4.1e-67 258.5 177 75.7
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.2e-66 256.9 175 77.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.4e-66 255.4 178 73.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 3.8e-65 251.9 174 71.8
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 6.5e-65 251.1 184 73.9
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.1e-64 250.4 184 73.9
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.5e-64 248.1 184 73.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 7.2e-64 247.7 168 78.6
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.6e-63 245.0 184 72.8
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 6.1e-63 244.6 162 76.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 7.9e-63 244.2 184 69.0
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.4e-62 243.4 174 70.7
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.3e-62 242.7 174 71.3
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.1e-61 240.4 177 70.1
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 2.5e-61 239.2 174 71.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.2e-60 236.1 163 73.0
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 2.8e-60 235.7 172 70.3
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 6.3e-60 234.6 147 78.2
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 5.0e-57 224.9 170 71.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.2e-55 220.3 186 64.0
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.7e-55 218.4 175 66.3
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.0e-54 217.2 175 61.7
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.5e-53 213.4 175 60.6
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 4.8e-52 208.4 184 56.5
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 6.3e-52 208.0 141 73.8
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 6.3e-52 208.0 141 73.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 5.9e-50 201.4 131 74.8
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 6.1e-47 191.4 179 60.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.8e-46 189.9 186 59.1
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.1e-43 178.7 178 52.2
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 2.0e-42 176.4 108 79.6
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 7.7e-42 174.5 175 58.9
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.0e-41 174.1 181 54.7
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.7e-39 166.0 113 74.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 4.4e-37 158.7 172 48.8
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 7.0e-35 151.4 95 78.9
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 4.4e-29 132.1 193 47.7
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.7e-29 131.7 88 73.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 9.1e-27 124.4 156 42.3
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 3.3e-24 115.9 177 40.7
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.0e-22 109.0 185 36.2
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.2e-21 107.5 177 36.7
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-20 104.0 70 72.9
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.9e-20 102.1 102 59.8
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.6e-15 87.0 51 84.3
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.8e-13 78.6 89 48.3
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 5.8e-13 78.6 113 47.8
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 9.8e-13 77.8 50 72.0
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.0e-09 67.8 50 64.0
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 6.6e-09 65.1 86 43.0
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 9.5e-08 61.2 37 78.4
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.1e-07 60.1 45 64.4
CAN.G10322.1 Capsicum annuum HOM05D001108 ORTHO05D115629 6.8e-06 55.1 45 60.0
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 6.8e-06 55.1 64 54.7


User provided reference genes

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