Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 5.0e-227 790.8 413 100.0
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.8e-193 678.7 413 85.2
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 4.8e-193 677.9 413 85.5
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 9.0e-192 673.7 413 84.7
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.4e-189 666.4 413 83.3
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.9e-188 660.6 413 83.8
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 7.9e-188 660.6 413 82.8
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.8e-187 659.4 411 83.2
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.7e-187 657.1 413 83.3
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 8.7e-187 657.1 415 83.4
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 8.7e-187 657.1 426 80.8
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 5.6e-186 654.4 414 82.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 9.6e-186 653.7 412 83.3
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.3e-185 653.3 414 83.6
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.3e-185 653.3 408 82.6
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.3e-185 653.3 413 82.6
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.6e-185 652.9 413 83.1
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 3.7e-185 651.7 413 82.3
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 8.1e-185 650.6 417 82.5
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 5.3e-184 647.9 413 82.6
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.0e-183 646.0 413 80.6
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 5.8e-183 644.4 414 80.9
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.9e-182 642.1 413 82.1
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 8.4e-182 640.6 413 80.9
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.4e-181 639.8 413 80.4
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.9e-181 639.4 417 79.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 7.1e-181 637.5 413 80.4
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.3e-181 637.1 413 80.1
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 9.3e-181 637.1 413 80.1
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.1e-180 636.0 413 80.1
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 2.7e-180 635.6 413 79.9
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.6e-180 634.8 413 80.1
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.3e-179 632.5 412 79.6
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 3.9e-179 631.7 413 80.6
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 6.7e-179 630.9 416 79.3
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 8.7e-179 630.6 408 79.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.1e-178 630.2 414 79.2
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.1e-178 630.2 414 79.7
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.5e-178 629.8 411 79.8
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.9e-178 629.4 411 80.3
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.5e-178 629.0 421 78.6
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 4.3e-178 628.2 413 78.7
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 5.7e-178 627.9 413 79.9
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.3e-177 626.7 416 79.3
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.6e-177 626.3 416 77.9
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.6e-177 626.3 431 76.8
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.8e-177 625.5 415 78.3
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.8e-177 625.5 413 78.7
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.8e-177 625.5 416 78.4
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 3.7e-177 625.2 426 78.9
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 4.8e-177 624.8 413 78.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.2e-177 624.0 413 79.7
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.1e-176 623.6 413 76.8
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.8e-176 622.9 416 78.4
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 3.1e-176 622.1 416 78.8
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 5.3e-176 621.3 411 79.3
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 6.9e-176 620.9 416 77.2
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.0e-175 619.4 420 78.3
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 2.0e-175 619.4 413 77.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 3.4e-175 618.6 413 79.4
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.5e-175 618.2 419 77.3
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 7.6e-175 617.5 416 76.9
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.7e-174 616.3 415 78.3
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 2.2e-174 615.9 414 79.2
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 2.9e-174 615.5 414 77.8
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.4e-174 614.0 424 77.6
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.4e-174 614.0 413 77.7
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 1.9e-173 612.8 413 75.8
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.5e-173 612.5 413 77.5
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.2e-173 612.1 413 76.8
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 3.2e-173 612.1 419 77.1
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.2e-173 612.1 416 76.7
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.2e-173 611.7 424 77.4
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 9.3e-173 610.5 450 74.4
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-172 609.8 413 77.2
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.6e-172 609.8 413 77.5
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.1e-172 609.4 414 77.8
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.8e-171 606.3 362 87.3
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.8e-171 606.3 414 75.6
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.9e-171 605.1 430 74.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.7e-171 604.4 444 74.1
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.7e-171 604.0 444 73.9
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-170 603.6 421 75.1
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.3e-170 602.1 414 76.3
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.3e-170 601.7 417 76.0
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 5.7e-170 601.3 417 76.0
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.2e-169 599.4 413 74.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.8e-169 599.0 424 75.0
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 8.2e-169 597.4 418 76.1
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-168 597.0 416 75.0
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.8e-168 596.3 416 75.5
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.0e-168 594.0 409 74.3
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.6e-167 592.4 424 72.2
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.6e-167 592.4 409 74.3
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.2e-165 585.5 417 74.1
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.2e-164 583.6 417 73.9
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 4.6e-164 581.6 393 76.1
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 4.8e-161 571.6 417 72.2
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.2e-158 562.8 414 74.6
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 6.5e-158 561.2 480 66.9
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 6.5e-158 561.2 480 66.9
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 4.2e-157 558.5 338 84.9
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.0e-154 549.7 416 70.2
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.8e-152 543.1 348 78.7
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 7.0e-152 541.2 362 76.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 7.0e-152 541.2 362 76.2
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.2e-149 532.3 317 85.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 8.8e-147 524.2 358 76.5
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 9.1e-144 514.2 353 75.1
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 4.5e-143 511.9 422 66.8
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 5.2e-139 498.4 413 66.6
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.9e-134 482.6 416 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 9.8e-130 467.6 427 56.9
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 8.0e-124 448.0 429 60.1
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.2e-116 421.8 408 59.1
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 8.0e-116 421.4 273 79.9
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 5.4e-112 408.7 373 58.7
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.6e-106 389.8 322 66.1
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 8.3e-105 384.8 362 62.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 7.1e-104 381.7 324 65.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 9.6e-85 318.2 317 52.7
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.3e-81 307.8 259 65.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 2.4e-80 303.5 420 43.1
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 2.3e-78 297.0 428 41.8
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 5.1e-70 269.2 464 39.0
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.1e-67 261.5 473 36.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.7e-60 236.5 327 43.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.1e-59 233.4 126 88.1
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.0e-58 230.7 134 85.1
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.0e-54 216.9 317 42.0
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 9.1e-51 205.3 344 38.1
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.0e-46 191.8 337 35.0
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-46 191.0 105 86.7
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.1e-46 189.5 105 85.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 6.9e-43 179.1 128 73.4
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 8.5e-41 172.2 131 65.6
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.7e-36 157.9 98 80.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.0e-30 136.7 120 62.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.0e-25 122.1 164 48.2
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.5e-24 117.5 65 89.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.7e-23 113.2 58 84.5
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.5e-18 96.7 73 69.9
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 7.7e-18 95.9 101 56.4
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 7.7e-18 95.9 132 44.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.5e-16 91.7 104 48.1
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-16 89.7 65 69.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.8e-15 87.4 101 43.6
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.2e-13 82.0 58 75.9
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.7e-13 79.7 52 69.2
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 8.3e-12 75.9 47 76.6
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.5e-10 70.5 70 58.6
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 5.0e-09 66.6 36 86.1
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 5.0e-09 66.6 36 86.1
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 5.0e-09 66.6 36 86.1
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 6.6e-09 66.2 50 60.0
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 5.6e-08 63.2 95 48.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.6e-08 63.2 43 69.8
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.2e-07 62.0 36 86.1
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-07 60.5 39 76.9
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 1.0e-06 58.9 37 73.0
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 3.0e-06 57.4 50 60.0
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 4.0e-06 57.0 98 40.8
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 5.2e-06 56.6 120 27.5
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 120 27.5
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 120 27.5
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 8.9e-06 55.8 120 27.5
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 8.9e-06 55.8 120 27.5


User provided reference genes

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