Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 9.5e-142 506.9 270 100.0
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.1e-116 423.7 267 82.8
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.8e-116 422.9 267 82.4
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 5.3e-116 421.4 272 79.8
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 7.1e-113 411.0 267 80.5
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 2.1e-112 409.5 268 77.6
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 4.6e-112 408.3 269 78.8
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 7.8e-112 407.5 267 78.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 3.0e-111 405.6 264 79.9
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 3.9e-111 405.2 269 77.7
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 5.1e-111 404.8 269 76.6
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 6.6e-111 404.4 268 80.2
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 5.6e-110 401.4 271 79.7
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 5.6e-110 401.4 263 80.2
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.3e-109 400.2 265 79.2
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 6.2e-109 397.9 270 78.9
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 8.1e-109 397.5 263 77.6
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.4e-108 396.7 286 74.5
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.4e-108 396.0 263 77.9
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.1e-108 395.6 265 77.7
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.0e-108 395.2 269 76.2
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 4.0e-108 395.2 264 79.2
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 5.3e-108 394.8 257 79.4
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 9.0e-108 394.0 258 79.1
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.2e-107 393.7 263 77.6
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 2.6e-107 392.5 262 78.2
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 3.4e-107 392.1 261 76.6
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 3.4e-107 392.1 256 79.3
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.8e-107 391.3 256 79.3
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 5.8e-107 391.3 265 75.8
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 5.8e-107 391.3 257 79.4
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 7.6e-107 391.0 257 77.0
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 7.6e-107 391.0 266 77.8
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 9.9e-107 390.6 257 79.8
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 9.9e-107 390.6 264 78.4
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.7e-106 389.8 267 76.0
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 1.7e-106 389.8 262 76.3
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 2.2e-106 389.4 261 77.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.2e-106 389.4 256 78.9
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.2e-106 389.4 253 81.0
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.9e-106 389.0 256 78.9
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 3.8e-106 388.7 259 77.2
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.8e-106 388.7 256 78.5
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 4.9e-106 388.3 267 74.5
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 4.9e-106 388.3 287 74.2
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.9e-106 388.3 267 77.2
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 6.4e-106 387.9 257 79.0
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 8.4e-106 387.5 260 78.8
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.1e-105 387.1 263 74.5
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.1e-105 387.1 263 76.4
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.9e-105 386.3 261 77.8
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.4e-105 386.0 266 75.2
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.4e-105 386.0 266 74.8
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 3.2e-105 385.6 263 76.8
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 3.2e-105 385.6 263 77.2
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 4.2e-105 385.2 260 76.2
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 5.4e-105 384.8 266 74.4
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 9.3e-105 384.0 267 76.0
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 9.3e-105 384.0 251 78.5
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.5e-104 382.1 258 75.6
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 7.9e-104 380.9 257 77.0
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 1.3e-103 380.2 254 78.3
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 2.3e-103 379.4 260 75.8
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 3.9e-103 378.6 262 73.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 5.1e-103 378.3 269 72.1
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 5.1e-103 378.3 262 73.7
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 6.7e-103 377.9 262 73.7
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 6.7e-103 377.9 256 77.3
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 6.7e-103 377.9 269 72.5
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.1e-102 377.1 262 73.7
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.1e-102 377.1 258 76.0
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.5e-102 376.7 269 71.7
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.5e-102 376.7 259 73.7
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.5e-102 376.7 306 67.6
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.5e-102 376.7 257 76.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 4.3e-102 375.2 251 77.3
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 7.4e-102 374.4 262 73.7
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 7.4e-102 374.4 269 71.4
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 9.6e-102 374.0 258 75.6
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 9.6e-102 374.0 263 76.0
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 9.6e-102 374.0 269 72.1
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 2.1e-101 372.9 269 71.0
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.8e-101 372.5 257 77.4
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.1e-100 370.5 279 68.8
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.4e-100 370.2 269 70.6
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 3.1e-100 369.0 269 73.6
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 3.1e-100 369.0 323 64.4
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 3.4e-99 365.5 268 70.5
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 4.9e-98 361.7 260 73.1
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 9.3e-97 357.5 235 78.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 3.5e-96 355.5 318 61.9
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 9.6e-94 347.4 255 70.2
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.3e-93 347.1 235 77.9
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 6.9e-92 341.3 225 78.2
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 6.9e-92 341.3 225 78.2
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 6.9e-92 341.3 235 76.6
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 8.4e-90 334.3 267 64.8
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 1.9e-89 333.2 254 69.3
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.7e-85 318.9 408 48.5
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.8e-84 316.6 200 84.0
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 4.1e-84 315.5 222 73.0
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.2e-80 303.9 196 81.1
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 1.8e-79 300.1 194 79.9
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 2.3e-79 299.7 239 62.8
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 5.3e-76 288.5 192 80.7
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.6e-75 286.2 192 78.6
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 5.5e-73 278.5 194 75.8
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.1e-72 276.6 262 56.9
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 6.1e-72 275.0 181 77.9
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 5.1e-71 271.9 269 53.9
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 3.7e-69 265.8 242 58.7
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 7.0e-68 261.5 247 53.4
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.9e-67 258.5 226 63.3
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.3e-66 257.3 295 52.9
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.7e-64 249.6 249 54.2
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.0e-58 231.1 162 77.2
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.8e-55 220.3 203 64.5
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.1e-49 201.1 237 49.4
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 1.1e-49 201.1 146 73.3
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.0e-47 193.0 258 46.5
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 6.8e-47 191.8 236 47.9
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.5e-46 190.7 153 66.0
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.6e-46 189.9 158 65.2
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 7.2e-41 171.8 242 44.6
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 5.6e-25 119.0 94 67.0
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 3.5e-19 99.8 70 71.4
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 2.3e-18 97.1 85 60.0
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 4.7e-16 89.4 55 83.6
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 4.7e-16 89.4 70 64.3
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.8e-15 87.4 53 86.8
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 4.9e-13 79.3 63 58.7
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 1.9e-09 67.4 43 72.1
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.6e-08 64.3 56 50.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 2.4e-07 60.5 99 36.4
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 4.4e-06 56.2 81 39.5


User provided reference genes

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