Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 1.2e-39 166.0 81 100.0
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 1.2e-39 166.0 81 100.0
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 2.2e-25 118.6 74 73.0
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 1.4e-24 115.9 73 71.2
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 5.4e-24 114.0 73 71.2
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 2.0e-23 112.1 74 74.3
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 2.7e-23 111.7 73 74.0
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 3.5e-23 111.3 73 72.6
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 7.8e-23 110.2 73 71.2
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 7.8e-23 110.2 73 71.2
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 1.3e-22 109.4 73 69.9
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 8.6e-22 106.7 74 71.6
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 3.3e-21 104.8 74 68.9
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 7.3e-21 103.6 74 67.6
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 7.3e-21 103.6 74 67.6
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 3.6e-20 101.3 76 63.2
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 4.7e-20 100.9 74 68.9
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 4.7e-20 100.9 74 68.9
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 4.7e-20 100.9 74 62.2
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 1.1e-19 99.8 73 68.5
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 1.1e-19 99.8 73 68.5
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 1.4e-19 99.4 72 61.1
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 1.8e-19 99.0 72 68.1
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 1.8e-19 99.0 82 58.5
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 2.3e-19 98.6 72 63.9
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 3.1e-19 98.2 72 61.1
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 3.1e-19 98.2 73 60.3
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 5.2e-19 97.4 73 65.8
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 6.8e-19 97.1 72 61.1
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 8.9e-19 96.7 69 65.2
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 8.9e-19 96.7 73 65.8
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 8.9e-19 96.7 73 64.4
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.0e-18 95.5 72 61.1
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 2.0e-18 95.5 73 65.8
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 3.4e-18 94.7 73 63.0
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 5.8e-18 94.0 73 63.0
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 7.5e-18 93.6 72 63.9
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 9.8e-18 93.2 72 59.7
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 1.3e-17 92.8 72 59.7
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 1.7e-17 92.4 72 63.9
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 2.2e-17 92.0 73 60.3
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 2.9e-17 91.7 73 64.4
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 6.4e-17 90.5 73 58.9
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 1.4e-16 89.4 72 54.2
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 1.9e-16 89.0 73 63.0
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 3.2e-16 88.2 73 54.8
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 3.2e-16 88.2 56 73.2
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 4.1e-16 87.8 75 65.3
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 4.1e-16 87.8 79 60.8
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 4.1e-16 87.8 78 55.1
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 5.4e-16 87.4 70 55.7
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 9.2e-16 86.7 72 55.6
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 9.2e-16 86.7 78 53.8
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 9.2e-16 86.7 67 64.2
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 1.2e-15 86.3 57 68.4
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 2.0e-15 85.5 72 54.2
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 3.5e-15 84.7 72 59.7
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.6e-15 84.3 73 63.0
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.6e-15 84.3 73 63.0
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 4.6e-15 84.3 70 55.7
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 7.8e-15 83.6 72 61.1
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 7.8e-15 83.6 73 60.3
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 5.0e-14 80.9 64 57.8
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 5.0e-14 80.9 75 52.0
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 1.5e-13 79.3 74 55.4
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 2.5e-13 78.6 72 56.9
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 3.3e-13 78.2 70 55.7
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 4.3e-13 77.8 72 52.8
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 9.5e-13 76.6 66 59.1
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 1.2e-12 76.3 66 57.6
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 1.6e-12 75.9 51 70.6
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 2.1e-12 75.5 73 57.5
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 4.7e-12 74.3 70 55.7
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 1.1e-11 73.2 73 49.3
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 1.1e-11 73.2 66 56.1
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 1.1e-11 73.2 74 52.7
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 1.4e-11 72.8 73 50.7
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 1.4e-11 72.8 58 58.6
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 3.1e-11 71.6 70 54.3
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 4.0e-11 71.2 50 68.0
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 5.2e-11 70.9 73 49.3
Haze_25678 Corylus avellana HOM05D007094 ORTHO05D008264 8.9e-11 70.1 74 52.7
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 1.2e-10 69.7 73 47.9
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 1.2e-10 69.7 74 51.4
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 1.5e-10 69.3 77 45.5
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 1.5e-10 69.3 70 50.0
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 2.0e-10 68.9 73 47.9
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 2.0e-10 68.9 73 47.9
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 2.6e-10 68.6 73 47.9
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 2.6e-10 68.6 73 47.9
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 2.6e-10 68.6 70 50.0
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 3.4e-10 68.2 65 50.8
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 1.3e-09 66.2 70 48.6
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 2.9e-09 65.1 64 54.7
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 3.7e-09 64.7 70 48.6
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 3.7e-09 64.7 65 49.2
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.1e-08 63.2 45 60.0
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 2.4e-08 62.0 57 54.4
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 3.2e-08 61.6 49 55.1
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 3.2e-08 61.6 49 55.1
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 4.1e-08 61.2 64 46.9
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 5.4e-08 60.8 51 60.8
Sed0018655 Sechium edule HOM05D007094 ORTHO05D008264 5.4e-08 60.8 71 53.5


User provided reference genes

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