Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 2.7e-112 408.7 210 100.0
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 2.5e-97 359.0 205 87.8
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 7.2e-97 357.5 205 86.8
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.6e-96 356.3 205 86.3
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 2.8e-96 355.5 205 86.3
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 4.7e-96 354.8 205 84.9
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 8.0e-96 354.0 205 85.4
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 8.0e-96 354.0 205 85.4
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.0e-95 353.6 205 85.4
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.0e-95 353.6 205 83.9
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 1.4e-95 353.2 205 83.9
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 2.3e-95 352.4 205 85.4
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.0e-95 352.1 205 84.9
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 3.0e-95 352.1 205 85.4
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 4.0e-95 351.7 205 84.4
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 4.0e-95 351.7 205 83.9
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 6.8e-95 350.9 205 84.4
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 8.9e-95 350.5 205 84.4
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.6e-94 349.0 205 82.9
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.4e-94 348.6 205 82.0
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 3.4e-94 348.6 205 83.4
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 4.4e-94 348.2 205 82.9
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 5.7e-94 347.8 205 85.4
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 5.7e-94 347.8 205 83.4
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 7.5e-94 347.4 207 84.1
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.3e-93 346.7 217 82.9
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.2e-93 345.9 209 80.4
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 2.2e-93 345.9 209 80.4
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.2e-93 345.9 209 80.4
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 2.8e-93 345.5 205 84.4
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 3.7e-93 345.1 205 83.9
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 3.7e-93 345.1 204 84.8
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 4.9e-93 344.7 209 83.7
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 4.9e-93 344.7 205 82.4
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 8.3e-93 344.0 205 83.9
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.1e-92 343.6 205 85.4
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.1e-92 343.6 205 83.4
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.1e-92 343.6 205 82.4
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.4e-92 343.2 205 81.5
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 2.4e-92 342.4 200 85.5
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 2.4e-92 342.4 206 83.5
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 2.4e-92 342.4 205 82.4
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 3.2e-92 342.0 200 83.5
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 9.2e-92 340.5 200 83.5
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.2e-91 340.1 205 81.0
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.2e-91 340.1 206 83.0
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.7e-91 339.0 205 81.0
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 3.5e-91 338.6 205 80.0
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.5e-91 338.2 205 81.0
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 4.5e-91 338.2 205 81.0
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 4.5e-91 338.2 205 82.4
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 4.5e-91 338.2 236 74.2
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 4.5e-91 338.2 205 81.0
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 5.9e-91 337.8 205 80.5
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 7.8e-91 337.4 205 80.5
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 7.8e-91 337.4 205 81.0
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.0e-90 337.0 205 80.5
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.0e-90 337.0 258 69.8
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.3e-90 336.7 205 82.0
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 1.7e-90 336.3 205 80.5
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.7e-90 336.3 205 81.0
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.3e-90 335.9 205 80.5
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 2.9e-90 335.5 205 79.0
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 2.9e-90 335.5 206 80.6
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.9e-90 335.1 205 80.0
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.5e-89 333.2 205 79.5
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.5e-89 333.2 229 75.5
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 3.3e-89 332.0 205 80.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.3e-89 332.0 200 80.5
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 3.3e-89 332.0 206 77.2
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 4.3e-89 331.6 205 78.5
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 5.6e-89 331.3 207 75.8
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 7.3e-89 330.9 205 78.5
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 9.5e-89 330.5 205 78.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.2e-88 330.1 204 79.4
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.1e-88 329.3 217 76.5
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.7e-88 328.2 205 79.5
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.8e-87 326.2 205 76.6
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.8e-87 326.2 205 79.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 2.3e-87 325.9 203 80.3
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.3e-87 325.9 205 78.5
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.1e-87 325.5 205 78.5
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 7.5e-86 320.9 252 68.7
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 7.5e-86 320.9 252 68.7
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 4.9e-85 318.2 205 78.5
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.9e-84 316.2 220 74.1
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 2.4e-84 315.8 205 78.5
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 9.2e-84 313.9 205 75.6
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.6e-83 313.2 204 76.5
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 2.7e-83 312.4 253 66.0
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.0e-82 308.9 187 82.9
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.2e-80 303.5 152 99.3
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.6e-78 295.8 205 72.2
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 3.4e-78 295.4 171 84.2
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.2e-75 287.0 229 65.9
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.6e-75 286.6 242 62.4
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.0e-74 283.9 170 80.6
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 8.6e-74 280.8 212 68.9
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.2e-71 271.6 189 75.1
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.5e-70 270.0 222 64.9
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.5e-70 270.0 204 62.3
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 7.5e-70 267.7 209 63.6
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 3.3e-65 252.3 148 81.8
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 5.8e-62 241.5 205 62.4
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.3e-61 240.4 170 65.9
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.9e-61 239.2 147 78.9
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 7.8e-59 231.1 150 79.3
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 2.1e-56 223.0 198 58.1
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 4.6e-51 205.3 120 81.7
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.0e-50 204.1 205 56.1
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.4e-47 193.7 151 64.2
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 6.9e-47 191.4 120 77.5
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 5.8e-46 188.3 196 55.1
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 7.9e-43 177.9 173 54.9
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.3e-42 177.2 185 52.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 3.9e-42 175.6 102 82.4
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.5e-41 173.7 160 61.9
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 3.2e-36 156.0 208 41.8
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 7.1e-36 154.8 87 88.5
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.1e-31 141.0 109 71.6
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 5.3e-31 138.7 97 73.2
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 5.3e-31 138.7 97 73.2
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 5.5e-28 128.6 93 69.9
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.2e-27 127.5 92 69.6
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 2.8e-24 116.3 78 74.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 2.8e-24 116.3 112 58.0
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 1.4e-20 104.0 57 94.7
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.0e-18 97.8 71 63.4
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.4e-15 87.4 56 80.4
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 9.1e-15 84.7 58 70.7
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 2.8e-08 63.2 44 72.7
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.5e-06 57.4 83 42.2


User provided reference genes

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