Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 0.0e+00 1196.8 687 100.0
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 0.0e+00 1136.3 685 93.0
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 0.0e+00 1104.7 691 90.0
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 0.0e+00 1095.5 693 88.9
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 0.0e+00 1087.0 688 88.1
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 6.9e-306 1053.5 692 84.8
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 1.3e-304 1049.3 688 84.9
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 9.4e-303 1043.1 689 85.9
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.4e-301 1039.3 686 85.3
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 8.8e-301 1036.6 687 86.2
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.2e-297 1026.2 685 83.6
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.2e-297 1026.2 687 82.8
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.6e-297 1025.0 686 84.1
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.5e-296 1020.4 685 83.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 8.5e-296 1020.0 685 83.1
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 9.4e-295 1016.5 688 83.7
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.6e-294 1015.8 686 82.4
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.7e-294 1015.0 687 81.5
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.7e-294 1015.0 686 84.4
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 8.0e-294 1013.4 728 79.0
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.0e-293 1013.1 684 82.9
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 5.2e-293 1010.7 687 82.4
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.6e-292 1008.4 687 81.4
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 7.4e-292 1006.9 728 78.6
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.8e-291 1005.0 686 82.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.9e-288 995.0 686 80.8
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 3.8e-288 994.6 686 81.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.1e-287 993.0 686 80.8
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.9e-287 992.3 685 80.3
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.9e-287 992.3 686 81.2
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.6e-286 989.2 687 82.5
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 3.6e-286 988.0 687 80.8
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.0e-285 986.5 687 78.9
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 4.0e-285 984.6 655 82.1
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 5.2e-285 984.2 676 83.0
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.6e-284 981.9 686 79.6
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.3e-283 979.5 678 82.3
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.7e-283 979.2 689 78.1
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 4.8e-283 977.6 685 80.9
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 6.3e-283 977.2 671 80.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.4e-282 976.1 657 82.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.4e-282 975.3 678 83.9
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.4e-282 975.3 678 82.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 4.1e-282 974.5 689 79.2
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.6e-281 972.6 682 81.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.9e-280 968.4 687 78.9
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.8e-280 968.0 686 78.6
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.9e-279 965.7 686 81.0
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 4.2e-279 964.5 689 81.0
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 5.5e-279 964.1 750 72.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 7.2e-279 963.8 750 72.8
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 2.1e-278 962.2 696 78.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 2.1e-278 962.2 685 77.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 4.7e-278 961.1 686 77.0
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.4e-277 959.5 688 80.7
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 2.3e-277 958.7 686 77.8
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 6.8e-277 957.2 681 77.5
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.2e-276 956.4 682 77.1
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 7.5e-276 953.7 684 76.9
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.3e-275 953.0 690 79.4
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.7e-275 951.4 655 79.4
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 4.8e-275 951.0 667 77.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 8.3e-275 950.3 686 77.7
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 3.1e-274 948.3 659 78.3
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.1e-274 948.3 678 78.2
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 3.1e-274 948.3 688 78.1
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.6e-273 946.0 668 77.5
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 2.0e-273 945.7 667 77.7
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.9e-273 944.1 727 74.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 3.8e-272 941.4 684 75.9
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 6.6e-272 940.6 684 77.3
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.5e-271 939.5 686 74.8
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.9e-271 939.1 684 77.2
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 8.0e-270 933.7 685 76.4
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 6.8e-269 930.6 685 76.2
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 2.6e-268 928.7 683 75.7
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 5.7e-268 927.5 682 76.8
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 7.0e-266 920.6 695 78.4
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.0e-264 916.8 681 76.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.7e-264 916.0 686 76.7
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 2.3e-264 915.6 682 76.4
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 3.9e-264 914.8 685 75.5
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 6.6e-264 914.1 685 75.5
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 2.1e-262 909.1 682 75.4
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 6.1e-262 907.5 691 76.0
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 6.1e-262 907.5 691 76.0
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.2e-260 903.3 690 73.8
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.7e-259 899.4 686 73.9
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.7e-259 899.4 684 74.6
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 8.3e-259 897.1 687 74.7
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 2.4e-258 895.6 1036 55.7
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.2e-257 893.3 676 74.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 4.3e-255 884.8 715 71.5
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 5.6e-255 884.4 655 75.3
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 9.5e-255 883.6 675 77.2
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.2e-254 883.2 640 80.5
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.7e-251 872.8 678 70.8
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.2e-250 867.1 733 68.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 7.3e-247 857.4 669 72.2
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-245 853.6 719 70.4
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 3.1e-245 852.0 684 73.0
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.7e-243 846.3 687 70.2
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.3e-240 835.9 667 70.9
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 4.3e-239 831.6 672 70.4
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 2.1e-238 829.3 577 80.1
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.1e-238 829.3 626 75.9
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 2.0e-236 822.8 653 71.4
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.8e-236 821.2 719 66.3
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.7e-235 819.7 661 70.5
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.5e-231 805.8 740 65.7
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.6e-230 803.1 693 67.5
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 3.5e-225 785.4 658 68.7
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 3.3e-215 752.3 546 79.7
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.3e-208 730.3 705 63.5
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.3e-203 713.8 650 61.2
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 5.0e-203 711.8 678 60.9
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 3.2e-202 709.1 667 61.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 7.1e-202 708.0 674 61.7
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.5e-164 582.8 403 83.1
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 3.5e-164 582.8 424 78.8
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 6.1e-161 572.0 700 50.4
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.8e-143 512.3 368 75.8
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.2e-126 457.2 348 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 2.6e-119 433.7 569 49.9
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.7e-94 351.3 364 59.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.7e-86 324.7 474 47.7
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 1.1e-82 312.0 480 47.1
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.4e-77 295.0 268 64.9
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.5e-71 275.0 712 31.0
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 4.2e-53 213.8 778 31.5
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.2e-50 205.7 185 65.4
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 5.4e-48 196.8 131 79.4
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.9e-46 191.0 158 66.5
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.0e-43 182.6 127 76.4
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 5.4e-40 170.2 563 31.1
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 4.5e-39 167.2 94 89.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 7.5e-26 123.2 90 75.6
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.7e-25 122.1 602 25.1
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.6e-20 105.5 686 22.3
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.1e-19 101.3 71 76.1
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 7.3e-13 80.1 109 54.1
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.4e-11 75.9 43 81.4
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 1.8e-11 75.5 706 22.1
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.0e-10 72.0 68 61.8
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.6e-07 62.4 82 48.8
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 3.5e-07 61.2 54 61.1
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 3.0e-06 58.2 82 48.8


User provided reference genes

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