Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 3050.4 1630 100.0
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 2097.8 1640 72.4
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 1435.2 1713 52.8
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 1399.4 1700 52.7
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 0.0e+00 1328.5 1694 50.7
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1319.3 1696 51.9
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1270.0 1759 49.0
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 1220.3 1707 49.8
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 0.0e+00 1132.5 1714 46.1
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 0.0e+00 1115.9 1726 45.2
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 1105.9 1701 46.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 3.6e-300 1035.8 1639 45.6
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 3.8e-270 936.0 1753 40.7
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 2.7e-255 886.7 1521 40.7
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 4.1e-171 607.1 1865 32.7
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.4e-163 581.3 1854 32.7
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.7e-140 505.4 1843 31.4
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-124 451.8 1911 30.4
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 7.5e-117 426.8 1803 30.5
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.7e-116 425.6 1852 30.2
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 8.3e-116 423.3 1882 29.3
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 4.7e-111 407.5 1841 29.7
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 8.7e-105 386.7 1887 28.7
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.9e-100 371.7 1725 29.0
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 2.4e-99 368.6 1711 28.8
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.3e-96 358.2 1884 28.6
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.2e-93 349.7 1867 27.7
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 9.9e-93 346.7 1846 27.7
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 6.7e-89 334.0 1718 27.8
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 1.1e-86 326.6 1706 27.2
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 4.0e-86 324.7 338 55.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 5.3e-86 324.3 1887 27.6
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.2e-84 318.9 1848 28.0
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.1e-82 312.4 1875 27.8
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.7e-82 312.0 1838 27.7
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 7.4e-80 303.9 1886 27.3
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.1e-78 300.1 1934 27.2
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.5e-77 294.7 1830 27.8
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.3e-76 293.1 2046 26.2
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.1e-75 290.0 1776 27.1
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.4e-75 289.7 1715 27.7
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 6.1e-74 284.3 1769 26.6
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.3e-73 283.1 1917 26.8
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.0e-73 282.0 1904 26.6
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-72 280.0 1910 25.9
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.5e-72 279.6 1903 26.4
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-72 279.6 1758 26.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.1e-70 273.5 1722 26.1
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.0e-70 270.4 1672 27.6
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.5e-69 269.6 1832 26.1
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-66 259.6 1634 27.7
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 5.1e-65 254.6 1739 27.4
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.0e-64 252.7 1708 26.9
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.3e-63 250.0 1687 27.2
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 6.3e-63 247.7 1853 25.4
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.4e-62 246.5 1692 27.8
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 5.3e-62 244.6 365 43.3
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 2.9e-60 238.8 2017 25.6
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.4e-59 236.5 1677 26.2
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 9.4e-59 233.8 1816 25.7
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.0e-57 230.3 1639 27.4
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.4e-57 229.9 999 28.5
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 3.0e-57 228.8 1740 25.6
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 8.8e-57 227.3 830 33.4
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.1e-56 226.9 1720 24.2
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 5.7e-56 224.6 1847 25.5
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 9.7e-56 223.8 545 33.0
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.4e-54 219.9 1997 24.4
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-53 216.5 466 39.7
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 3.8e-52 211.8 1852 25.5
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.9e-49 201.8 1992 24.4
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.3e-48 198.7 346 39.6
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 5.7e-48 198.0 740 33.2
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 5.7e-48 198.0 753 32.9
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 1.7e-47 196.4 1796 25.2
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 2.8e-47 195.7 739 32.7
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 8.2e-47 194.1 498 40.2
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 5.3e-46 191.4 1966 24.4
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.0e-44 187.2 642 35.2
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.3e-44 186.8 479 33.4
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.1e-43 183.7 1760 24.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 7.2e-43 181.0 1706 25.7
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.1e-42 179.5 1622 24.0
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 8.8e-41 174.1 1831 25.8
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 8.8e-41 174.1 619 34.7
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.4e-40 171.8 1812 24.2
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 7.5e-40 171.0 1745 24.4
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.3e-39 170.2 461 40.8
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.7e-39 169.9 649 33.3
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 6.3e-39 167.9 917 30.6
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.1e-38 167.2 1821 24.1
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 9.1e-38 164.1 1828 23.9
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.1e-35 157.1 1436 24.0
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 2.1e-34 152.9 179 50.3
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.7e-34 152.5 864 31.2
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.8e-33 149.8 1868 24.8
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.3e-33 149.4 636 33.0
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 8.8e-33 147.5 287 35.5
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.7e-31 143.3 1823 23.4
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 2.2e-31 142.9 718 31.2
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.0e-29 136.3 657 26.0
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.5e-27 129.4 1767 24.1
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 3.3e-27 129.0 1834 23.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.5e-24 120.2 763 28.8
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.0e-24 119.8 354 37.0
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 2.0e-24 119.8 1715 22.3
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.4e-24 119.0 616 29.7
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.7e-23 116.7 1711 22.7
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.1e-22 114.0 1891 24.9
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 3.2e-22 112.5 1815 24.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.2e-21 110.5 1842 23.8
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.6e-21 110.2 642 29.6
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.5e-19 103.6 1874 24.2
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 7.3e-19 101.3 325 29.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.2e-18 100.5 1911 23.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.7e-18 98.6 249 31.7
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 8.0e-18 97.8 607 31.0
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.8e-17 96.7 87 57.5
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.3e-17 96.3 1771 20.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 2.6e-16 92.8 418 28.2
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 4.4e-16 92.0 110 44.5
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.8e-16 90.9 535 24.3
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 3.7e-15 89.0 85 56.5
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 6.0e-13 81.6 186 34.9
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 9.5e-11 74.3 190 35.3
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.1e-10 73.2 505 23.4
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.6e-10 72.4 102 36.3
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.1e-09 70.9 129 45.0
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.4e-09 70.5 427 26.5
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.5e-08 67.0 506 25.3
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 2.6e-08 66.2 259 29.0
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 4.4e-08 65.5 135 40.7
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 7.5e-08 64.7 66 50.0
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 2.2e-07 63.2 544 24.6
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 3.7e-07 62.4 67 50.7
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.9e-06 60.1 247 25.1
Psat7g120880 Pisum sativum HOM05D000120 ORTHO05D030268 1.9e-06 60.1 47 63.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.9e-06 60.1 95 35.8
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 5.4e-06 58.5 64 50.0


User provided reference genes

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