Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 0.0e+00 1776.1 873 100.0
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1166.8 900 64.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1152.9 905 64.1
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 0.0e+00 1152.9 905 65.2
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 0.0e+00 1120.9 905 62.9
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1114.8 886 63.5
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1100.1 884 63.0
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 0.0e+00 1080.1 902 62.1
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 5.4e-311 1070.8 905 60.9
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 6.5e-301 1037.3 904 60.6
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 2.1e-267 926.0 775 62.1
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.7e-259 898.3 928 51.6
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.0e-253 880.6 942 51.0
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.2e-249 867.1 930 51.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.9e-248 862.4 924 51.3
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.6e-246 856.7 925 50.4
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.3e-244 848.6 931 50.1
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 8.1e-243 844.3 919 49.9
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 6.4e-240 834.7 913 49.6
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.2e-239 832.4 913 49.6
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.3e-237 826.2 910 49.2
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.3e-235 820.5 913 49.4
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 8.1e-235 817.8 919 48.0
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.5e-233 813.5 920 47.4
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 4.9e-232 808.5 923 47.8
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.1e-230 803.1 921 49.1
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.8e-229 800.0 910 48.5
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 4.3e-228 795.4 898 48.7
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.4e-225 785.8 910 47.6
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.7e-224 783.5 918 46.9
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 2.5e-223 779.6 910 46.9
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.1e-220 770.8 913 48.1
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.4e-217 759.2 909 45.5
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 5.0e-216 755.4 909 45.8
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 1.6e-214 750.4 919 44.8
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.3e-211 740.7 922 44.5
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.2e-209 734.2 901 47.8
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 4.7e-206 722.2 908 45.6
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.1e-204 717.6 895 45.7
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.9e-192 676.4 716 48.7
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 8.5e-192 674.9 892 43.6
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 8.5e-192 674.9 953 42.3
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.8e-186 657.1 836 43.8
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 2.9e-184 649.8 916 41.3
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 4.2e-183 646.0 904 42.7
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 5.2e-181 639.0 896 43.1
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 6.3e-179 632.1 911 42.2
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.1e-178 631.3 782 45.0
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 4.2e-175 619.4 810 44.0
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.7e-171 607.4 744 46.8
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 4.1e-170 602.8 898 42.2
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 7.0e-170 602.1 923 40.1
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.2e-169 601.3 877 40.4
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 6.2e-166 589.0 917 39.1
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 6.8e-165 585.5 919 38.7
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.9e-162 577.4 896 40.0
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 7.0e-162 575.5 903 40.0
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.3e-160 571.2 912 38.9
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 2.3e-160 570.5 924 38.0
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.1e-157 561.6 915 40.1
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 6.8e-157 558.9 917 37.7
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.2e-155 553.9 919 38.0
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 5.6e-151 539.3 911 37.8
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 9.5e-151 538.5 954 36.8
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.2e-150 538.1 928 37.7
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.4e-149 534.6 870 37.6
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.4e-149 534.6 940 36.4
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 4.0e-149 533.1 896 37.4
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 2.9e-147 526.9 885 37.5
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.2e-146 523.5 944 36.8
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.1e-144 516.2 929 35.5
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 8.1e-142 508.8 917 35.4
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 8.1e-142 508.8 925 36.5
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 5.8e-140 502.7 894 37.4
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 8.4e-139 498.8 885 36.2
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 7.1e-138 495.7 924 35.5
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 2.7e-137 493.8 927 35.7
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.0e-136 491.9 880 36.2
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.0e-136 491.9 909 36.3
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 1.7e-136 491.1 892 35.7
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 3.0e-136 490.3 893 35.2
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 8.7e-136 488.8 877 36.6
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 2.5e-135 487.3 892 35.4
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.1e-134 484.2 902 35.0
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.3e-133 479.6 930 35.9
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.6e-132 477.2 913 36.5
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 7.6e-132 475.7 885 37.1
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 4.2e-130 469.9 961 35.2
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 4.0e-125 453.4 791 38.6
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 8.7e-120 435.6 747 35.5
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 6.9e-117 426.0 824 35.7
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 3.4e-116 423.7 909 33.6
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.3e-115 421.8 827 35.7
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.5e-106 391.0 878 31.7
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 5.5e-106 389.8 648 37.3
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.2e-105 388.7 536 43.3
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.3e-103 380.2 564 40.2
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 6.3e-102 376.3 907 31.6
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 2.6e-100 370.9 396 49.0
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 3.4e-92 344.0 948 32.0
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 2.7e-89 334.3 676 34.0
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 5.3e-85 320.1 429 42.9
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.1e-82 312.4 945 29.4
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-82 311.6 971 29.5
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.6e-81 308.5 666 33.2
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 5.7e-79 300.1 934 29.2
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 7.7e-76 289.7 476 39.1
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.0e-67 262.7 629 31.5
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 3.0e-64 251.1 475 34.1
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 4.1e-61 240.7 513 32.0
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.0e-60 238.4 928 26.3
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 2.5e-58 231.5 201 57.2
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-57 229.2 348 38.8
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.0e-56 224.2 771 28.4
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 2.7e-52 211.5 177 58.2
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 6.6e-51 206.8 350 36.0
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.8e-48 196.8 444 33.1
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.0e-47 195.3 475 33.9
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 3.0e-43 181.4 292 37.7
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 8.6e-43 179.9 736 25.8
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.1e-42 179.5 482 30.3
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.7e-41 174.1 432 31.7
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.6e-39 168.3 289 40.1
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 9.2e-37 159.8 114 66.7
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 6.6e-35 153.7 306 30.4
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 6.6e-35 153.7 306 30.4
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.5e-34 152.5 283 33.9
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 1.6e-33 149.1 179 50.3
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.1e-32 144.8 153 46.4
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 8.9e-32 143.3 153 45.8
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 4.4e-31 141.0 251 36.3
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 3.2e-29 134.8 549 26.0
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.6e-28 131.0 552 26.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.0e-27 129.8 212 36.3
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.2e-25 122.9 769 23.7
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 8.9e-24 116.7 592 24.2
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 1.2e-20 106.3 107 54.2
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 3.5e-20 104.8 530 24.5
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 4.6e-20 104.4 139 43.2
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 8.7e-19 100.1 488 23.6
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 4.3e-18 97.8 181 40.3
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.1e-17 95.5 380 26.3
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.6e-17 94.7 380 26.6
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-15 89.7 149 39.6
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 5.1e-11 74.3 149 33.6
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 1.9e-10 72.4 149 32.2
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 9.6e-10 70.1 396 22.0
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 4.9e-06 57.8 121 32.2
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 4.9e-06 57.8 140 32.9


User provided reference genes

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