Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 3.5e-92 341.7 177 100.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.6e-65 253.1 188 72.3
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.8e-65 252.3 190 72.6
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 6.2e-65 251.1 189 73.5
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.4e-64 250.0 190 72.1
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.4e-64 250.0 188 72.9
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 5.2e-64 248.1 189 73.0
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.2e-63 246.9 188 72.3
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.2e-63 246.9 183 74.9
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 2.6e-63 245.7 188 71.3
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 2.6e-63 245.7 184 72.3
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 2.6e-63 245.7 188 71.8
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.9e-62 242.3 189 70.9
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 8.3e-62 240.7 187 72.2
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.1e-61 240.4 189 70.4
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.1e-61 240.4 192 70.8
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.4e-61 239.2 189 70.4
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 3.2e-61 238.8 177 71.8
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 5.4e-61 238.0 185 73.5
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 9.2e-61 237.3 184 69.0
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.2e-60 236.9 189 69.8
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.2e-60 236.9 181 70.2
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.6e-60 236.5 184 70.1
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.1e-60 236.1 187 66.8
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.1e-60 236.1 187 66.8
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.7e-60 235.7 185 70.3
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.7e-60 235.7 184 68.5
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.7e-60 235.7 189 67.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.6e-60 235.0 185 69.2
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 6.0e-60 234.6 185 68.6
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.0e-60 234.6 147 81.6
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 7.8e-60 234.2 176 73.3
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.0e-59 233.8 178 68.5
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.0e-59 233.8 186 65.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.7e-59 233.0 184 66.3
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-59 233.0 180 69.4
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.7e-59 233.0 181 68.0
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.3e-59 232.6 189 67.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.0e-59 232.3 180 69.4
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.9e-59 231.9 189 66.7
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.9e-59 231.9 146 80.8
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 8.6e-59 230.7 183 68.3
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 8.6e-59 230.7 186 67.7
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.1e-58 230.3 147 81.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.1e-58 230.3 190 65.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.5e-58 229.9 185 65.9
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.5e-58 229.2 185 68.1
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.3e-58 228.8 178 70.2
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 4.3e-58 228.4 158 74.7
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.3e-58 228.4 161 75.2
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 4.3e-58 228.4 186 68.3
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 4.3e-58 228.4 180 68.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 5.6e-58 228.0 185 68.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.6e-58 228.0 159 75.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 7.3e-58 227.6 159 74.8
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 9.5e-58 227.3 185 66.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.2e-57 226.9 189 66.7
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.6e-57 226.5 161 73.3
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.6e-57 226.5 162 72.8
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.6e-57 226.5 157 76.4
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.6e-57 226.5 158 75.9
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.1e-57 226.1 187 66.8
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 3.6e-57 225.3 158 73.4
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 4.7e-57 224.9 158 73.4
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.7e-57 224.9 156 73.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.7e-57 224.9 161 72.7
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 6.2e-57 224.6 180 66.1
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 6.2e-57 224.6 157 74.5
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.2e-57 224.6 157 74.5
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.2e-57 224.6 157 74.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 6.2e-57 224.6 172 69.2
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 8.1e-57 224.2 187 67.4
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 8.1e-57 224.2 183 67.2
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.1e-56 223.8 143 76.9
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.0e-56 221.9 158 72.8
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 5.2e-56 221.5 150 75.3
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 5.2e-56 221.5 158 73.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 5.2e-56 221.5 186 65.1
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.2e-56 221.5 164 73.8
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 5.2e-56 221.5 148 75.7
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 1.5e-55 219.9 183 66.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.0e-55 219.5 173 68.2
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-55 219.2 159 74.2
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.4e-55 218.8 204 60.8
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 4.4e-55 218.4 213 58.2
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 5.8e-55 218.0 150 74.0
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 5.8e-55 218.0 150 74.0
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 5.8e-55 218.0 157 72.6
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 5.8e-55 218.0 185 66.5
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 7.6e-55 217.6 159 74.2
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 7.6e-55 217.6 159 74.2
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 7.6e-55 217.6 159 73.6
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 7.6e-55 217.6 159 73.6
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 7.6e-55 217.6 159 73.6
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 9.9e-55 217.2 129 86.0
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.3e-54 216.9 158 71.5
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.2e-54 216.1 172 66.9
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.2e-54 216.1 151 72.8
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 2.9e-54 215.7 143 76.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 2.9e-54 215.7 153 73.9
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.9e-54 215.7 183 66.1
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 6.4e-54 214.5 125 86.4
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.1e-53 213.8 185 62.2
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 3.2e-53 212.2 171 66.1
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 3.2e-53 212.2 154 72.7
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.2e-53 212.2 172 65.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 4.1e-53 211.8 187 63.6
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.2e-52 210.3 181 61.9
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.1e-52 209.5 125 84.8
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 6.0e-52 208.0 185 60.0
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.0e-51 207.2 151 72.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.0e-51 207.2 150 71.3
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.0e-51 207.2 185 62.7
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.7e-51 206.5 186 61.8
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.7e-51 206.5 221 55.2
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 5.1e-51 204.9 169 63.3
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.1e-51 204.9 124 81.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.5e-50 203.4 174 62.6
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.5e-50 202.6 148 71.6
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 9.6e-50 200.7 125 80.0
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.6e-49 199.9 133 75.9
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.1e-49 199.5 124 79.8
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.0e-48 195.3 146 74.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.8e-48 194.5 178 58.4
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.2e-47 193.7 132 72.0
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.4e-47 192.2 178 59.0
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 4.4e-47 191.8 166 64.5
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 9.9e-47 190.7 187 60.4
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.3e-46 190.3 166 64.5
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.9e-46 189.1 188 58.5
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.1e-45 187.2 126 74.6
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.9e-45 186.4 152 67.8
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.9e-45 186.4 157 62.4
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 3.2e-45 185.7 152 67.1
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 4.2e-45 185.3 152 67.1
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 9.3e-45 184.1 162 63.0
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.2e-44 183.7 141 71.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.1e-41 172.9 126 70.6
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 6.2e-41 171.4 145 63.4
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.0e-40 168.7 144 61.1
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 4.0e-40 168.7 120 71.7
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 9.0e-40 167.5 149 61.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.2e-39 167.2 174 56.9
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.5e-39 166.8 149 59.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 7.6e-39 164.5 125 66.4
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.3e-38 163.7 190 51.1
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 6.4e-38 161.4 162 58.6
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 6.4e-38 161.4 144 58.3
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 6.0e-36 154.8 185 49.7
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.0e-35 154.1 124 62.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.7e-35 151.0 139 60.4
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 3.3e-34 149.1 125 59.2
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-32 144.1 105 67.6
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-32 143.3 96 77.1
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 4.0e-32 142.1 140 60.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 9.0e-32 141.0 126 58.7
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-29 133.7 77 84.4
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.2e-29 132.5 103 63.1
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 3.9e-27 125.6 115 60.9
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 4.8e-25 118.6 119 58.0
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-24 117.5 68 88.2
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.8e-22 109.0 67 83.6
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.4e-21 107.1 67 82.1
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.2e-21 105.5 111 54.1
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 7.4e-18 94.7 74 63.5
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 7.4e-18 94.7 53 81.1
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 9.6e-18 94.4 56 76.8
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.4e-16 90.5 53 77.4
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.1e-16 89.4 53 75.5
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-15 86.3 90 54.4
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 4.5e-15 85.5 90 54.4
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.7e-14 83.6 47 89.4
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.9e-13 80.1 124 36.3
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.0e-11 74.3 77 55.8
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.9e-08 61.6 58 56.9
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.2e-07 60.8 58 56.9
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.0e-07 60.1 37 73.0
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 7.7e-07 58.2 58 55.2
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 8.5e-06 54.7 31 87.1


User provided reference genes

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