Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0343431 Lupinus albus HOM05D002326 ORTHO05D026399 6.4e-28 126.7 65 100.0
Lalb_Chr04g0253761 Lupinus albus HOM05D002326 ORTHO05D003994 7.6e-21 103.2 54 94.4
Ca_04808_v3 Cicer arietinum L. HOM05D002326 ORTHO05D003994 1.0e-20 102.8 54 94.4
Lj3g0000009 Lotus japonicus HOM05D002326 ORTHO05D003994 1.3e-20 102.4 54 94.4
vmacro22023 Vaccinium macrocarpon HOM05D002326 ORTHO05D003994 1.3e-20 102.4 55 90.9
arahy.Tifrunner.gnm1.ann1.0698HC Arachis hypogaea HOM05D002326 ORTHO05D003994 1.7e-20 102.1 54 92.6
arahy.Tifrunner.gnm1.ann1.3W57F5 Arachis hypogaea HOM05D002326 ORTHO05D003994 1.7e-20 102.1 54 92.6
Lalb_Chr10g0101301 Lupinus albus HOM05D002326 ORTHO05D026399 1.7e-20 102.1 53 96.2
Medtr8g022210 Medicago truncatula HOM05D002326 ORTHO05D003994 2.2e-20 101.7 54 92.6
Phvul.010G126000 Phaseolus vulgaris HOM05D002326 ORTHO05D003994 2.2e-20 101.7 54 92.6
Glyma.07G042400 Glycine max HOM05D002326 ORTHO05D003994 2.9e-20 101.3 54 90.7
Glyma.16G010800 Glycine max HOM05D002326 ORTHO05D003994 2.9e-20 101.3 54 90.7
TPR.G16679 Trifolium pratense HOM05D002326 ORTHO05D003994 2.9e-20 101.3 54 92.6
Sabra01G0127600 Salix brachista HOM05D002326 ORTHO05D003994 3.8e-20 100.9 56 87.5
Psat4g167000 Pisum sativum HOM05D002326 ORTHO05D003994 4.9e-20 100.5 54 90.7
CANSAT56G1234 Cannabis sativa HOM05D002326 ORTHO05D003994 6.5e-20 100.1 54 88.9
CANSAT78G0763 Cannabis sativa HOM05D002326 ORTHO05D003994 1.1e-19 99.4 54 88.9
Cfa003504 Carpinus fangiana HOM05D002326 ORTHO05D003994 1.1e-19 99.4 57 84.2
Nitab4.5_0006425g0020 Nicotiana tabacum HOM05D002326 ORTHO05D003994 1.1e-19 99.4 54 88.9
COL.COLO4_30811 Corchorus olitorius HOM05D002326 ORTHO05D003994 1.9e-19 98.6 54 87.0
Sabra03G0041100 Salix brachista HOM05D002326 ORTHO05D003994 2.5e-19 98.2 54 87.0
BcaB03g13223 Brassica carinata HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
A08p33170 Brassica napus HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
A09p64280 Brassica napus HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
C08p15010 Brassica napus HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
C08p47890 Brassica napus HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
BolC8t49131H Brassica oleracea HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
BolC8t52326H Brassica oleracea HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
BraA08t35235Z Brassica rapa HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 85.2
Duzib235G0416 Durio zibethinus HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
Eucgr.F02475 Eucalyptus grandis HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
Potri.003G069900 Populus trichocarpa HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
Hund12991 Selenicereus undatus HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
Sc20g0001630 Simmondsia chinensis HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
SGA_v2.0_scaffold71G23883 Striga asiatica HOM05D002326 ORTHO05D003994 3.2e-19 97.8 53 86.8
TWI14G1357 Tripterygium wilfordii HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
TWI23G0881 Tripterygium wilfordii HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
GSVIVG01016709001 Vitis vinifera HOM05D002326 ORTHO05D003994 3.2e-19 97.8 54 87.0
Actinidia24715 Actinidia chinensis HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 87.0
Actinidia31165 Actinidia chinensis HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 87.0
A06p09570 Brassica napus HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 85.2
C05p11280 Brassica napus HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 85.2
BolC5t29877H Brassica oleracea HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 85.2
BraA09t41771Z Brassica rapa HOM05D002326 ORTHO05D003994 4.2e-19 97.4 53 84.9
Cfa003501 Carpinus fangiana HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 87.0
Haze_16074 Corylus avellana HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 87.0
Manes.04G148400 Manihot esculenta HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 87.0
Manes.11G015900 Manihot esculenta HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 87.0
PSO675G9173 Papaver somniferum HOM05D002326 ORTHO05D003994 4.2e-19 97.4 54 87.0
CAN.G1243.10 Capsicum annuum HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
ClCG09G001170 Citrullus lanatus HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
MELO3C024331.2 Cucumis melo HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
CsaV3_7G034220 Cucumis sativus L. HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
Gohir.A05G138600 Gossypium hirsutum HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
Gohir.A10G056500 Gossypium hirsutum HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
Gohir.D05G140800 Gossypium hirsutum HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
Gorai.011G062500 Gossypium raimondii HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
Nitab4.5_0012739g0020 Nicotiana tabacum HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
SalBow6G3844 Salvia bowleyana HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 83.3
SalBow6G4017 Salvia bowleyana HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 83.3
Sed0007818 Sechium edule HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
Sed0011862 Sechium edule HOM05D002326 ORTHO05D003994 5.5e-19 97.1 54 87.0
CAN.G862.34 Capsicum annuum HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 87.0
Ciclev10026450m.g Citrus clementina HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 85.2
Lj9A535G48 Lonicera japonica HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 85.2
Nitab4.5_0002716g0100 Nicotiana tabacum HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 85.2
PSO732G0061 Papaver somniferum HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 85.2
PGR049G0011 Punica granatum HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 83.3
PGR119G1428 Punica granatum HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 83.3
Sopen12g023900 Solanum pennellii HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 87.0
THA.LOC104815214 Tarenaya hassleriana HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 85.2
Thecc.06G125700 Theobroma cacao HOM05D002326 ORTHO05D003994 7.1e-19 96.7 54 85.2
Ah.14g083270 Amaranthus hybridus HOM05D002326 ORTHO05D003994 9.3e-19 96.3 54 87.0
AT1G11890 Arabidopsis thaliana HOM05D002326 ORTHO05D003994 9.3e-19 96.3 54 83.3
HanXRQChr10g0311891 Helianthus annuus HOM05D002326 ORTHO05D003994 9.3e-19 96.3 54 87.0
Potri.001G165600 Populus trichocarpa HOM05D002326 ORTHO05D003994 9.3e-19 96.3 54 85.2
PGSC0003DMG402004894 Solanum tuberosum HOM05D002326 ORTHO05D003994 9.3e-19 96.3 54 87.0
Atru.chr1.4098 Acer truncatum HOM05D002326 ORTHO05D003994 1.2e-18 95.9 54 85.2
Cpa.g.sc25.155 Carica papaya HOM05D002326 ORTHO05D003994 1.2e-18 95.9 54 85.2
CiPaw.01G215100 Carya illinoinensis HOM05D002326 ORTHO05D003994 1.2e-18 95.9 54 85.2
DCAR_016104 Daucus carota HOM05D002326 ORTHO05D003994 1.2e-18 95.9 54 83.3
Peaxi162Scf00207g01539 Petunia axillaris HOM05D002326 ORTHO05D003994 1.2e-18 95.9 54 85.2
HPP92_009004 Vanilla planifolia HOM05D002326 ORTHO05D003994 1.2e-18 95.9 54 85.2
ECA234G0971 Erigeron canadensis HOM05D002326 ORTHO05D003994 1.6e-18 95.5 54 83.3
Nitab4.5_0003137g0060 Nicotiana tabacum HOM05D002326 ORTHO05D003994 1.6e-18 95.5 54 85.2
QL05p003251 Quercus lobata HOM05D002326 ORTHO05D003994 1.6e-18 95.5 53 84.9
Sp1g10510 Schrenkiella parvula HOM05D002326 ORTHO05D003994 1.6e-18 95.5 54 83.3
TAR383G0167 Trochodendron aralioides HOM05D002326 ORTHO05D003994 1.6e-18 95.5 54 85.2
THA.LOC104826526 Tarenaya hassleriana HOM05D002326 ORTHO05D003994 2.1e-18 95.1 54 83.3
Lsat_1_v5_gn_1_37780 Lactuca sativa HOM05D002326 ORTHO05D003994 2.7e-18 94.7 54 85.2
Actinidia21806 Actinidia chinensis HOM05D002326 ORTHO05D026399 3.5e-18 94.4 54 83.3
FAN05G2217 Fragaria x ananassa HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 83.3
Gohir.D10G058400 Gossypium hirsutum HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 85.2
Lj1A1142T62 Lonicera japonica HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 81.5
Nn8g41149 Nelumbo nucifera HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 83.3
Peaxi162Scf00038g01941 Petunia axillaris HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 83.3
RcHm_v2.0_Chr2g0146571 Rosa chinensis HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 83.3
Solyc06g063030.3 Solanum lycopersicum HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 85.2
Sopen06g022480 Solanum pennellii HOM05D002326 ORTHO05D003994 3.5e-18 94.4 54 85.2
AL1G23060 Arabidopsis lyrata HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 81.5
Carub.0001s1155 Capsella rubella HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 81.5
CARHR012210 Cardamine hirsuta HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 81.5
CiPaw.09G079600 Carya illinoinensis HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 81.5
ClCG07G014420 Citrullus lanatus HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 83.3
Migut.D00923 Erythranthe guttata HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 83.3
Thhalv10008741m.g Eutrema salsugineum HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 81.5
MD09G1177400 Malus domestica HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 83.3
Nitab4.5_0010758g0020 Nicotiana tabacum HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 83.3
Oeu005589.1 Olea europaea HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 79.6
Rhsim08G0241600 Rhododendron simsii HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 83.3
Solyc12g049420.2 Solanum lycopersicum HOM05D002326 ORTHO05D003994 4.6e-18 94.0 54 85.2
EL10Ac8g18386 Beta vulgaris HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 81.5
CSS0007843 Camellia sinensis var. sinensis HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 83.3
CSS0012586 Camellia sinensis var. sinensis HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 83.3
MBI18_g29068_MAGBIO Magnolia biondii HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 81.5
MD17G1149000 Malus domestica HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 83.3
Nn4g24517 Nelumbo nucifera HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 83.3
Solyc03g122090.3 Solanum lycopersicum HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 83.3
Sopen03g040870 Solanum pennellii HOM05D002326 ORTHO05D003994 6.0e-18 93.6 54 83.3
Aqoxy3G00883 Aquilegia oxysepala HOM05D002326 ORTHO05D003994 7.9e-18 93.2 54 81.5
Hma1.2p1_0229F.1_g096800 Hydrangea macrophylla HOM05D002326 ORTHO05D003994 7.9e-18 93.2 54 81.5
AUR62010910 Chenopodium quinoa HOM05D002326 ORTHO05D003994 1.0e-17 92.8 54 81.5
AUR62021415 Chenopodium quinoa HOM05D002326 ORTHO05D003994 1.0e-17 92.8 54 81.5
Hma1.2p1_0090F.1_g046040 Hydrangea macrophylla HOM05D002326 ORTHO05D003994 1.0e-17 92.8 54 81.5
TAR626G1742 Trochodendron aralioides HOM05D002326 ORTHO05D003994 1.0e-17 92.8 54 79.6
Aa31LG1G2840 Aethionema arabicum HOM05D002326 ORTHO05D003994 1.3e-17 92.4 54 83.3
MSTRG.10929 Avicennia marina HOM05D002326 ORTHO05D026399 1.3e-17 92.4 54 79.6
SEGI_01821 Sequoiadendron giganteum HOM05D002326 ORTHO05D003994 1.3e-17 92.4 53 84.9
Cc04_g00990 Coffea canephora HOM05D002326 ORTHO05D003994 1.8e-17 92.0 54 79.6
CiPaw.02G133600 Carya illinoinensis HOM05D002326 ORTHO05D003994 2.3e-17 91.7 58 74.1
Dinv02945 Davidia involucrata HOM05D002326 ORTHO05D003994 2.3e-17 91.7 54 77.8
FvH4_6g35230 Fragaria vesca HOM05D002326 ORTHO05D003994 2.3e-17 91.7 54 79.6
FAN02G1493 Fragaria x ananassa HOM05D002326 ORTHO05D003994 2.3e-17 91.7 54 79.6
FAN09G4232 Fragaria x ananassa HOM05D002326 ORTHO05D003994 2.3e-17 91.7 54 79.6
FAN14G5281 Fragaria x ananassa HOM05D002326 ORTHO05D003994 2.3e-17 91.7 54 79.6
vmacro15061 Vaccinium macrocarpon HOM05D002326 ORTHO05D003994 2.3e-17 91.7 54 79.6
Aqoxy2G04120 Aquilegia oxysepala HOM05D002326 ORTHO05D003994 3.9e-17 90.9 54 81.5
Zm00001eb060410 Zea mays HOM05D002326 ORTHO05D003994 3.9e-17 90.9 54 79.6
CDE05G2396 Ceratophyllum demersum HOM05D002326 ORTHO05D003994 6.7e-17 90.1 54 74.1
PSO407G0105 Papaver somniferum HOM05D002326 ORTHO05D003994 8.7e-17 89.7 54 77.8
Hund00683 Selenicereus undatus HOM05D002326 ORTHO05D003994 1.5e-16 89.0 54 79.6
Os03g0791500 Oryza sativa ssp. japonica HOM05D002326 ORTHO05D003994 1.9e-16 88.6 54 75.9
PSO170G3446 Papaver somniferum HOM05D002326 ORTHO05D003994 1.9e-16 88.6 54 77.8
SalBow7G4107 Salvia bowleyana HOM05D002326 ORTHO05D003994 1.9e-16 88.6 54 75.9
ECA247G2740 Erigeron canadensis HOM05D002326 ORTHO05D003994 2.5e-16 88.2 54 79.6
HanXRQChr04g0094431 Helianthus annuus HOM05D002326 ORTHO05D003994 3.3e-16 87.8 54 79.6
Zm00001eb119070 Zea mays HOM05D002326 ORTHO05D003994 4.3e-16 87.4 54 74.1
unitig_746.g26753 Utricularia gibba HOM05D002326 ORTHO05D003994 5.7e-16 87.0 54 74.1
Prupe.3G036800 Prunus persica HOM05D002326 ORTHO05D003994 7.4e-16 86.7 48 87.5
Pp3c13_8740 Physcomitrium patens HOM05D002326 ORTHO05D003994 1.6e-15 85.5 53 75.5
Oeu008521.1 Olea europaea HOM05D002326 ORTHO05D003994 2.1e-15 85.1 48 83.3
Nitab4.5_0006232g0080 Nicotiana tabacum HOM05D002326 ORTHO05D003994 3.7e-15 84.3 47 87.2
SGA_v2.0_scaffold4G02086 Striga asiatica HOM05D002326 ORTHO05D003994 3.7e-15 84.3 54 74.1
BcaC05g25244 Brassica carinata HOM05D002326 ORTHO05D003994 3.1e-14 81.3 46 87.0
Pp3c3_11610 Physcomitrium patens HOM05D002326 ORTHO05D003994 3.1e-14 81.3 53 67.9
SMO169G0139 Selaginella moellendorffii HOM05D002326 ORTHO05D003994 1.0e-12 76.3 53 64.2
Haze_16079 Corylus avellana HOM05D002326 ORTHO05D003994 2.9e-12 74.7 63 63.5
Atru.chr1.4091 Acer truncatum HOM05D003142 ORTHO05D003600 5.0e-12 73.9 43 81.4
AagrBONN_evm.TU.Sc2ySwM_362.2465 Anthoceros agrestis HOM05D002326 ORTHO05D003994 3.2e-11 71.2 53 60.4
FvH4_6g47281 Fragaria vesca HOM05D002326 ORTHO05D003994 2.7e-10 68.2 55 63.6
FAN05G2742 Fragaria x ananassa HOM05D002326 ORTHO05D003994 2.7e-10 68.2 55 63.6
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.7e-10 68.2 55 63.6
Lsat_1_v5_gn_5_136820 Lactuca sativa HOM05D002326 ORTHO05D003994 1.0e-09 66.2 40 80.0
Cre12.g554700 Chlamydomonas reinhardtii HOM05D002326 ORTHO05D003994 3.9e-09 64.3 52 50.0
Mapoly0023s0071 Marchantia polymorpha HOM05D002326 ORTHO05D003994 2.5e-08 61.6 53 60.4
TWI59G0665 Tripterygium wilfordii HOM05D002326 ORTHO05D003994 3.7e-07 57.8 54 59.3


User provided reference genes

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