Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 3.4e-92 341.7 173 100.0
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 9.6e-79 297.0 173 84.4
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.5e-73 278.5 174 79.9
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.9e-72 275.0 173 78.0
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.1e-71 273.5 173 76.9
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.5e-71 272.3 173 76.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 4.3e-71 271.6 173 77.5
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.6e-71 271.2 175 77.7
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.3e-70 270.0 173 76.3
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.3e-70 270.0 175 77.1
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.8e-69 266.2 173 75.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.4e-69 265.8 173 75.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 3.1e-69 265.4 178 75.3
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 4.0e-69 265.0 171 73.1
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 5.3e-69 264.6 176 76.7
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 6.9e-69 264.2 173 76.9
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 6.9e-69 264.2 181 74.6
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 9.0e-69 263.8 173 75.1
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-68 263.1 173 74.6
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.0e-68 262.7 174 75.3
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.0e-68 262.7 170 77.1
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 2.6e-68 262.3 175 76.0
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.6e-68 262.3 173 72.8
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.5e-68 261.5 173 74.6
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.5e-68 261.5 173 74.6
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.5e-68 261.5 173 74.6
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 4.5e-68 261.5 169 75.7
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 7.6e-68 260.8 174 75.3
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 74.0
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 74.6
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.7e-67 259.6 173 76.9
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.7e-67 259.6 171 73.7
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 2.2e-67 259.2 173 74.0
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 2.2e-67 259.2 173 74.0
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.9e-67 258.8 172 75.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 3.8e-67 258.5 173 74.0
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 3.8e-67 258.5 174 74.1
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-67 258.5 174 74.1
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 4.9e-67 258.1 178 71.9
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 4.9e-67 258.1 173 74.6
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 4.9e-67 258.1 175 73.1
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 6.4e-67 257.7 173 74.0
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 6.4e-67 257.7 175 71.4
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 8.4e-67 257.3 174 73.6
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 8.4e-67 257.3 174 73.6
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 74.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.1e-66 256.9 174 74.1
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.1e-66 256.9 172 74.4
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.4e-66 256.5 174 71.8
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 73.0
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 72.4
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.9e-66 256.1 173 72.8
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.4e-66 255.8 173 74.6
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.2e-66 255.4 173 72.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.2e-66 255.0 173 73.4
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.2e-66 255.0 174 73.6
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 5.4e-66 254.6 173 73.4
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.4e-66 254.6 174 71.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 7.1e-66 254.2 174 73.6
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 70.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 7.1e-66 254.2 174 72.4
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.2e-65 253.4 174 71.8
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.6e-65 253.1 173 73.4
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-65 252.7 202 65.8
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.1e-65 252.7 175 72.6
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 70.5
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.6e-65 251.5 173 72.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 4.6e-65 251.5 171 73.1
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 4.6e-65 251.5 173 71.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.0e-65 251.1 202 65.3
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.0e-65 251.1 202 65.3
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 6.0e-65 251.1 173 71.7
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 7.9e-65 250.8 174 73.0
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.9e-65 250.8 159 74.8
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.0e-64 250.4 159 74.2
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.3e-64 250.0 164 74.4
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.3e-64 249.2 171 71.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.0e-64 248.8 164 74.4
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 3.9e-64 248.4 181 68.5
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.9e-64 248.4 159 74.2
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.9e-64 248.4 174 70.1
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 3.9e-64 248.4 167 72.5
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 5.1e-64 248.1 171 71.9
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 6.7e-64 247.7 163 73.6
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 6.7e-64 247.7 163 73.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 6.7e-64 247.7 173 70.5
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.1e-63 246.9 163 73.6
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.5e-63 246.5 171 71.9
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.3e-63 245.4 174 69.0
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 5.6e-63 244.6 175 70.9
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 7.4e-63 244.2 176 71.6
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.4e-63 244.2 159 72.3
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 9.6e-63 243.8 183 66.1
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.3e-62 243.4 159 73.6
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 2.1e-62 242.7 167 71.3
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 3.7e-62 241.9 170 72.9
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 6.2e-62 241.1 173 69.4
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 6.2e-62 241.1 197 64.5
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.4e-61 239.2 176 71.0
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.1e-61 238.8 159 73.6
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.1e-61 238.8 170 69.4
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.5e-60 236.5 174 72.4
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 5.8e-60 234.6 208 59.1
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 5.8e-60 234.6 173 67.1
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.2e-59 232.6 174 67.2
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.4e-58 229.9 227 54.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 3.2e-58 228.8 177 67.2
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.5e-57 225.3 220 56.8
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-56 223.0 139 77.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 5.1e-56 221.5 190 64.7
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 3.3e-55 218.8 173 61.8
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.7e-55 218.0 211 56.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 3.1e-53 212.2 144 70.1
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 4.1e-53 211.8 265 46.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.0e-48 197.2 184 59.8
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.9e-47 193.0 113 79.6
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.3e-47 192.2 120 76.7
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.4e-45 186.8 170 57.6
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.0e-44 183.0 173 60.1
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.4e-40 170.2 116 69.0
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 6.3e-38 161.4 119 69.7
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-35 153.7 109 69.7
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.7e-35 153.3 113 61.9
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 2.2e-35 152.9 139 50.4
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.1e-34 150.6 135 50.4
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.5e-34 149.4 98 72.4
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 7.2e-34 147.9 100 73.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 9.4e-34 147.5 102 66.7
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.4e-32 143.7 109 65.1
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.7e-32 141.4 119 65.5
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.6e-31 139.4 112 62.5
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 4.2e-26 122.1 81 72.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 4.2e-26 122.1 81 72.8
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 7.2e-26 121.3 103 60.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.4e-24 117.1 112 44.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.3e-22 110.5 85 70.6
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 1.7e-22 110.2 63 84.1
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.1e-21 107.5 64 81.2
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.4e-21 106.3 104 46.2
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.1e-21 104.4 99 54.5
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 5.9e-20 101.7 65 75.4
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.7e-19 100.1 61 75.4
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 3.8e-19 99.0 102 40.2
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.5e-19 97.8 99 51.5
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 1.6e-17 93.6 69 65.2
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 2.3e-16 89.7 87 48.3
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 6.8e-16 88.2 106 40.6
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.3e-14 84.0 50 78.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.4e-13 80.5 136 33.8
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.6e-12 77.0 104 45.2
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.8e-06 56.2 32 84.4


User provided reference genes

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