Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 0.0e+00 1283.9 636 100.0
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 7.9e-179 631.3 684 54.5
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 9.7e-161 571.2 767 46.0
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.3e-153 546.2 762 47.1
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.0e-141 505.8 695 47.1
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.5e-137 494.2 718 45.3
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 5.4e-119 432.6 583 48.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.5e-116 424.5 652 41.4
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 5.4e-111 406.0 657 40.3
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 9.2e-111 405.2 656 40.1
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.5e-108 397.1 683 38.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.7e-107 392.9 721 38.6
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 5.2e-106 389.4 658 41.3
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.6e-105 387.1 672 38.5
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.9e-104 382.9 678 39.7
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.2e-103 380.2 662 37.5
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.0e-103 379.0 653 38.7
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 9.2e-103 378.6 653 40.4
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.6e-102 377.9 665 40.2
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.6e-102 377.9 660 38.5
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.7e-102 377.1 659 40.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.7e-102 377.1 665 39.2
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.7e-101 374.4 661 40.5
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.9e-101 373.2 639 39.6
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.1e-100 371.7 665 37.3
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.5e-100 371.3 677 39.0
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 9.5e-100 368.6 695 37.3
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.2e-99 368.2 654 38.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.1e-99 367.5 694 37.9
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 4.7e-99 366.3 658 38.8
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.2e-99 365.9 697 38.3
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.2e-99 365.9 696 37.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.8e-98 364.4 728 36.5
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 4.0e-98 363.2 676 38.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 5.2e-98 362.8 700 37.9
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 8.9e-98 362.1 679 38.6
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 8.9e-98 362.1 699 38.5
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.2e-97 361.7 692 36.4
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.5e-97 361.3 684 35.7
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.4e-97 360.1 697 37.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 4.4e-97 359.8 679 36.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.7e-96 356.7 655 39.7
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 3.7e-96 356.7 686 35.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.4e-95 354.8 712 36.5
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 7.1e-95 352.4 692 36.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.2e-94 351.7 663 39.4
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.0e-93 347.1 668 37.4
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 5.1e-93 346.3 694 36.3
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.1e-93 346.3 701 36.2
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 6.6e-93 345.9 660 39.7
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.5e-92 344.7 710 37.0
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.2e-91 341.7 620 38.2
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 2.1e-91 340.9 703 37.0
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.8e-91 340.5 595 39.7
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 5.2e-90 336.3 665 35.6
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 4.9e-88 329.7 725 34.6
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 8.4e-88 328.9 677 36.8
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.4e-87 328.2 720 35.7
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.2e-86 325.1 739 34.9
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 4.6e-86 323.2 671 36.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 7.8e-86 322.4 650 36.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 5.1e-85 319.7 811 32.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.1e-84 318.5 651 36.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.2e-83 315.1 655 35.7
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 2.4e-82 310.8 728 34.1
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 3.1e-82 310.5 657 36.5
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.0e-82 310.1 710 34.9
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.7e-80 304.7 664 36.1
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.8e-80 303.5 676 34.9
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.8e-80 303.5 661 34.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.8e-80 303.5 688 34.4
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 3.2e-79 300.4 805 31.3
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 4.2e-79 300.1 809 30.7
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 7.1e-79 299.3 646 35.1
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 9.3e-79 298.9 644 35.2
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 9.3e-79 298.9 716 34.6
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.6e-78 298.1 715 33.7
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.7e-78 297.4 647 33.7
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 6.0e-78 296.2 660 34.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 7.8e-78 295.8 645 34.7
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 6.6e-77 292.7 654 34.9
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.1e-75 287.7 641 34.9
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.6e-75 287.0 641 34.5
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 6.2e-75 286.2 653 35.7
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.4e-74 285.0 650 33.7
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.4e-74 285.0 652 33.7
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.8e-74 284.6 650 33.4
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.3e-74 283.1 660 33.2
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.8e-72 276.9 687 33.2
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.1e-71 275.4 691 34.2
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-71 275.4 692 32.8
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.9e-71 274.6 672 32.4
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 4.6e-70 270.0 695 32.5
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.3e-69 268.5 637 33.9
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.5e-68 265.0 620 33.4
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 4.8e-67 260.0 743 31.2
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.4e-66 258.5 640 32.5
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.0e-65 254.6 659 32.8
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 3.4e-65 253.8 746 31.0
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 4.5e-65 253.4 539 35.8
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.7e-64 251.5 859 28.4
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.9e-64 250.0 638 33.2
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 6.4e-64 249.6 859 28.1
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.7e-62 244.2 695 30.8
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.3e-61 241.9 604 34.3
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 6.7e-61 239.6 559 36.0
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.5e-60 238.4 832 28.2
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 4.3e-60 236.9 628 32.0
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.6e-59 235.0 716 32.8
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.7e-59 233.8 628 32.8
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.4e-58 231.9 537 35.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 2.6e-57 227.6 618 32.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.4e-57 227.3 680 30.9
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.0e-56 225.7 682 30.1
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.9e-56 223.4 887 27.7
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 6.5e-56 223.0 684 31.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 2.7e-54 217.6 560 30.5
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.3e-52 210.7 915 25.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.0e-49 201.4 616 31.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.3e-48 198.7 540 32.6
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.7e-45 186.4 843 26.3
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.3e-44 183.7 379 36.9
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-40 172.2 580 30.0
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.2e-40 171.4 169 52.7
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.8e-34 151.8 225 41.3
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.8e-34 151.8 641 27.3
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 4.1e-34 150.6 415 29.4
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.6e-33 147.9 694 25.5
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.6e-33 147.9 639 28.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.0e-32 143.7 714 25.2
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.9e-31 141.7 282 36.2
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 6.1e-30 136.7 220 41.4
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.4e-29 135.6 299 34.8
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 3.0e-29 134.4 167 44.9
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 3.0e-29 134.4 288 35.4
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-28 132.5 463 30.5
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 4.4e-28 130.6 337 32.9
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.2e-27 128.3 401 29.9
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 4.8e-27 127.1 143 46.2
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.3e-26 123.6 169 43.8
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 7.7e-25 119.8 346 29.2
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.2e-23 114.0 522 26.2
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 3.6e-22 110.9 336 32.7
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 6.7e-21 106.7 342 29.8
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.2e-19 101.7 509 24.8
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.3e-18 97.1 85 50.6
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 2.7e-17 94.7 328 26.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.7e-16 92.0 84 52.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.2e-16 91.7 109 44.0
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.8e-16 90.9 335 30.4
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.1e-15 89.4 330 29.7
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 2.5e-15 88.2 335 30.1
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.2e-15 87.8 63 68.3
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.4e-13 82.4 174 33.3
Sc02g0003070 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.4e-13 82.4 392 28.1
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.8e-13 82.0 190 34.2
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 5.2e-13 80.5 127 40.9
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.8e-13 79.7 190 33.7
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 2.6e-12 78.2 57 54.4
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.8e-11 73.9 695 22.2
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.1e-10 72.8 82 37.8
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.4e-10 72.4 86 37.2
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.7e-09 68.2 155 34.8
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.0e-08 66.2 153 33.3
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 2.9e-08 64.7 82 47.6
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 6.1e-06 57.0 80 41.2


User provided reference genes

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